miRNA display CGI


Results 81 - 100 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 149234 0.84 0.051511
Target:  5'- --uGCcgCCgCCGCCGCCGCCGUCGCCu -3'
miRNA:   3'- uacUGuaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 147683 0.71 0.365423
Target:  5'- uUGGCGUCCaugaCGCCGUCG-UGCUGCUg -3'
miRNA:   3'- uACUGUAGGg---GCGGCGGCgGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 146451 0.78 0.118694
Target:  5'- -cGGCuUCCCCGCCGUCGCCGUCuacuccguGCCc -3'
miRNA:   3'- uaCUGuAGGGGCGGCGGCGGCGG--------CGG- -5'
15692 5' -64.7 NC_004065.1 + 145677 0.66 0.624975
Target:  5'- -cGAU-UCCCuaagCGCCGCCGCCGagaGUCu -3'
miRNA:   3'- uaCUGuAGGG----GCGGCGGCGGCgg-CGG- -5'
15692 5' -64.7 NC_004065.1 + 143039 0.69 0.46123
Target:  5'- gAUGGCcgcCCCCGgCGCCaccaccagcagGCCGUCGUCg -3'
miRNA:   3'- -UACUGua-GGGGCgGCGG-----------CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 142617 0.69 0.43601
Target:  5'- -cGACAcCCCCGaCCGCaucucugacggUGCucuCGCCGCCg -3'
miRNA:   3'- uaCUGUaGGGGC-GGCG-----------GCG---GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 142261 0.73 0.276379
Target:  5'- -cGACGUCgucgacgaUCCGCCGCgguaucgucgucauCGCCGUCGCCu -3'
miRNA:   3'- uaCUGUAG--------GGGCGGCG--------------GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 141926 0.67 0.541055
Target:  5'- -aGGC--UCCCGCaUGUCGUCGCUGCCc -3'
miRNA:   3'- uaCUGuaGGGGCG-GCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 140856 0.69 0.46123
Target:  5'- -aGACggCCCUGaagGCCGCCGCCaGCg -3'
miRNA:   3'- uaCUGuaGGGGCgg-CGGCGGCGG-CGg -5'
15692 5' -64.7 NC_004065.1 + 139897 0.69 0.469806
Target:  5'- -cGACGaguccuUCCCCGUCGUCGacaCGCCaCCg -3'
miRNA:   3'- uaCUGU------AGGGGCGGCGGCg--GCGGcGG- -5'
15692 5' -64.7 NC_004065.1 + 138816 0.73 0.260566
Target:  5'- -gGACGgcaCCGUCGCCGucaguCCGCCGCCg -3'
miRNA:   3'- uaCUGUaggGGCGGCGGC-----GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 138212 0.67 0.581778
Target:  5'- -cGACGUCUCgaccgCGCucugcgaugucgaggCGCuCGCCGCCGUCg -3'
miRNA:   3'- uaCUGUAGGG-----GCG---------------GCG-GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 137205 0.7 0.403659
Target:  5'- -cGGCAguccuUUCCUGCCGUCGUagCGCCGCa -3'
miRNA:   3'- uaCUGU-----AGGGGCGGCGGCG--GCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 136742 0.68 0.513839
Target:  5'- cUGGgGUCCa-GaCCGCCGgaGCCGCCg -3'
miRNA:   3'- uACUgUAGGggC-GGCGGCggCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 136199 0.67 0.568736
Target:  5'- -aGAguUCCgCGCCGUCaccaGCCaGUCGCCg -3'
miRNA:   3'- uaCUguAGGgGCGGCGG----CGG-CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 135816 0.68 0.50489
Target:  5'- gGUGACGgccgccUCCCCGUCGuCCGCcCGuCCGaCg -3'
miRNA:   3'- -UACUGU------AGGGGCGGC-GGCG-GC-GGCgG- -5'
15692 5' -64.7 NC_004065.1 + 135648 0.67 0.568736
Target:  5'- -cGACAg-CUCGCCGCgGCCGUaaCGCg -3'
miRNA:   3'- uaCUGUagGGGCGGCGgCGGCG--GCGg -5'
15692 5' -64.7 NC_004065.1 + 135398 0.79 0.113115
Target:  5'- -cGACGUCCCCGUCGUCaucacCCGCCGCg -3'
miRNA:   3'- uaCUGUAGGGGCGGCGGc----GGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 135316 0.7 0.395811
Target:  5'- -gGGCccgCUCCGCgGCUGCCGCguaCGCCu -3'
miRNA:   3'- uaCUGua-GGGGCGgCGGCGGCG---GCGG- -5'
15692 5' -64.7 NC_004065.1 + 135297 0.75 0.203208
Target:  5'- --cGCGUCUCCGCCGCCGaCUucggcccgcucgaGCCGCCc -3'
miRNA:   3'- uacUGUAGGGGCGGCGGC-GG-------------CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.