miRNA display CGI


Results 101 - 120 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 135168 0.68 0.520142
Target:  5'- gAUGACGacgagggacugCCCgagggacuguugggCGCCGCCGCCGaCgGCCc -3'
miRNA:   3'- -UACUGUa----------GGG--------------GCGGCGGCGGC-GgCGG- -5'
15692 5' -64.7 NC_004065.1 + 135126 0.8 0.090921
Target:  5'- -cGACAgUUCUCGUCGCCGCCGCCGUg -3'
miRNA:   3'- uaCUGU-AGGGGCGGCGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 134234 0.66 0.606148
Target:  5'- -gGGCAcgggCCCCgGCCGCCGauauaggcuugcCCGuCCGCg -3'
miRNA:   3'- uaCUGUa---GGGG-CGGCGGC------------GGC-GGCGg -5'
15692 5' -64.7 NC_004065.1 + 133591 0.66 0.634398
Target:  5'- cUG-UAUCCagguauauaaguCCGCCG-UGCCGCCGCUc -3'
miRNA:   3'- uACuGUAGG------------GGCGGCgGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 132081 0.66 0.634398
Target:  5'- ----gGUCCCCaCCGCUGCCa-CGCCg -3'
miRNA:   3'- uacugUAGGGGcGGCGGCGGcgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 131878 0.66 0.596757
Target:  5'- uUGAUGUUgCaCGCgaugCGCacCGCCGCCGCCu -3'
miRNA:   3'- uACUGUAGgG-GCG----GCG--GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 130737 0.67 0.587387
Target:  5'- gAUGAgCAUCUCCauGgUGCCGuCCGgCGCCa -3'
miRNA:   3'- -UACU-GUAGGGG--CgGCGGC-GGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 130359 0.66 0.624975
Target:  5'- -gGACGcUgUCGgCGCCG-CGCCGCCg -3'
miRNA:   3'- uaCUGUaGgGGCgGCGGCgGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 130345 0.68 0.478464
Target:  5'- cAUGACG-CCggaCCGCCGCgGCgGCgGCUg -3'
miRNA:   3'- -UACUGUaGG---GGCGGCGgCGgCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 130278 0.67 0.578045
Target:  5'- aGUGACAgucuaUCUCuauCGCCgGCuCGUCGCUGCCu -3'
miRNA:   3'- -UACUGU-----AGGG---GCGG-CG-GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 130070 0.71 0.350845
Target:  5'- -cGGCGUUUCgcaGCagcaGCCGCCGCCGCg -3'
miRNA:   3'- uaCUGUAGGGg--CGg---CGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 129020 0.79 0.09998
Target:  5'- -cGACGgcgCCCUcaacgcuGCCGCUGCCGCUGCCg -3'
miRNA:   3'- uaCUGUa--GGGG-------CGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 128818 0.72 0.296735
Target:  5'- -cGACGUCgCUGCCGCUGCgGgCGCa -3'
miRNA:   3'- uaCUGUAGgGGCGGCGGCGgCgGCGg -5'
15692 5' -64.7 NC_004065.1 + 128707 0.69 0.444329
Target:  5'- cUGAUcgCgCCCGCggaCGCCuCCGCCGCg -3'
miRNA:   3'- uACUGuaG-GGGCG---GCGGcGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 128668 0.85 0.040107
Target:  5'- gGUGGCggCgCCGCCGCCGCUGCCGCUc -3'
miRNA:   3'- -UACUGuaGgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 128582 0.66 0.638167
Target:  5'- -cGACGUCggcggcgaaggcgcaUCCGCaCG-CGCCaGCCGCCc -3'
miRNA:   3'- uaCUGUAG---------------GGGCG-GCgGCGG-CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 128486 0.75 0.208364
Target:  5'- cUGcCAgCgCCGCUGCUGCUGCCGCCu -3'
miRNA:   3'- uACuGUaGgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 128152 0.73 0.278182
Target:  5'- cUGGCGUUacgCUCGCCggGCCGCCaGCCGCUg -3'
miRNA:   3'- uACUGUAG---GGGCGG--CGGCGG-CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 127977 0.68 0.484571
Target:  5'- -cGGCGcuaacgCCCgGCCGCCGCgGgucaccgagguggcCCGCCg -3'
miRNA:   3'- uaCUGUa-----GGGgCGGCGGCGgC--------------GGCGG- -5'
15692 5' -64.7 NC_004065.1 + 127913 0.72 0.322946
Target:  5'- cGUGaACAUggUCCCGCCGCCcUCGgCGCCg -3'
miRNA:   3'- -UAC-UGUA--GGGGCGGCGGcGGCgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.