miRNA display CGI


Results 21 - 40 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 81164 0.77 0.141631
Target:  5'- ------cCCCCGCCGCCGCCuccucgaucgcggcgGCCGCCu -3'
miRNA:   3'- uacuguaGGGGCGGCGGCGG---------------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 109912 0.77 0.140293
Target:  5'- -cGGC-UCgUCCGCCGCgGCCGCCGUCg -3'
miRNA:   3'- uaCUGuAG-GGGCGGCGgCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 164686 0.81 0.080444
Target:  5'- -cGACccaCCCgcagcugcUGCCGCCGCCGCCGCCg -3'
miRNA:   3'- uaCUGua-GGG--------GCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 98152 0.82 0.062851
Target:  5'- gGUGAUAgUCgCCGCCGCCaCCGCCGCCu -3'
miRNA:   3'- -UACUGU-AGgGGCGGCGGcGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 149234 0.84 0.051511
Target:  5'- --uGCcgCCgCCGCCGCCGCCGUCGCCu -3'
miRNA:   3'- uacUGuaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 197704 0.84 0.046613
Target:  5'- -cGACGUCCgaCGCCGUCGCgGCCGCCg -3'
miRNA:   3'- uaCUGUAGGg-GCGGCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 113702 0.84 0.046613
Target:  5'- -cGACG-CCgUCGCCGCUGCCGCCGCCg -3'
miRNA:   3'- uaCUGUaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 24591 0.85 0.044337
Target:  5'- cGUGuCGUCgCCGCCaCCGCCGCCGCCg -3'
miRNA:   3'- -UACuGUAGgGGCGGcGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 65643 0.87 0.02749
Target:  5'- cUGACGgaCCCGCUGCCGCUGCCGCCg -3'
miRNA:   3'- uACUGUagGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 159687 0.9 0.017424
Target:  5'- -aGGCGcUCCUCGCCGCCGUCGCCGCCg -3'
miRNA:   3'- uaCUGU-AGGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 57758 0.81 0.082443
Target:  5'- -aGAgAUCgUCGUCGCCGCCGCCGUCg -3'
miRNA:   3'- uaCUgUAGgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 225651 0.81 0.082443
Target:  5'- -cGGC--UCCCGCCGCCGCCGUCGCg -3'
miRNA:   3'- uaCUGuaGGGGCGGCGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 110416 0.78 0.133779
Target:  5'- -cGGCGUCUCCuCCGCCGCCGgCGUCc -3'
miRNA:   3'- uaCUGUAGGGGcGGCGGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 99995 0.78 0.133779
Target:  5'- -cGuCGUCUUCGUCguaGCCGCCGCCGCCg -3'
miRNA:   3'- uaCuGUAGGGGCGG---CGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 27749 0.78 0.132826
Target:  5'- cUGAUGaCCCCGCCGCgcaucgagacgcugCGCCGCCGUCu -3'
miRNA:   3'- uACUGUaGGGGCGGCG--------------GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 146451 0.78 0.118694
Target:  5'- -cGGCuUCCCCGCCGUCGCCGUCuacuccguGCCc -3'
miRNA:   3'- uaCUGuAGGGGCGGCGGCGGCGG--------CGG- -5'
15692 5' -64.7 NC_004065.1 + 52542 0.78 0.118694
Target:  5'- -cGGCggCCCCGCCGUgCGCCcCCGCCg -3'
miRNA:   3'- uaCUGuaGGGGCGGCG-GCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 122243 0.79 0.113115
Target:  5'- -gGuCGUUCCUGUCGCCGCUGCUGCCc -3'
miRNA:   3'- uaCuGUAGGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 97685 0.79 0.113115
Target:  5'- uGUGAUAcUCgCgGUCGCUGCCGCCGCCg -3'
miRNA:   3'- -UACUGU-AGgGgCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 45191 0.8 0.090921
Target:  5'- -cGACAggggCaacaCGCCGCCGCUGCCGCCa -3'
miRNA:   3'- uaCUGUa---Ggg--GCGGCGGCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.