miRNA display CGI


Results 101 - 120 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 76393 0.71 0.336685
Target:  5'- -gGAUGagCUCGCCGCCGUccgaguggCGCCGCCc -3'
miRNA:   3'- uaCUGUagGGGCGGCGGCG--------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 36378 0.71 0.336685
Target:  5'- -cGcUAUCgUCGCucuCGCUGCCGCCGCCa -3'
miRNA:   3'- uaCuGUAGgGGCG---GCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 190832 0.71 0.341593
Target:  5'- -cGACA-CCgUGCgcgagaaauaaccaCGCCGCCGCCGUCg -3'
miRNA:   3'- uaCUGUaGGgGCG--------------GCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 195422 0.71 0.343712
Target:  5'- -cGuACGcUCCCGCCGCguCGCCGUCGUCg -3'
miRNA:   3'- uaC-UGUaGGGGCGGCG--GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 130070 0.71 0.350845
Target:  5'- -cGGCGUUUCgcaGCagcaGCCGCCGCCGCg -3'
miRNA:   3'- uaCUGUAGGGg--CGg---CGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 114319 0.72 0.290446
Target:  5'- gAUGucCAUCCUgGCgGCCGCCGCgaaacagaaCGCCg -3'
miRNA:   3'- -UACu-GUAGGGgCGgCGGCGGCG---------GCGG- -5'
15692 5' -64.7 NC_004065.1 + 97006 0.72 0.290446
Target:  5'- -cGACGUCU--GCUGCCGCUGCUGCUa -3'
miRNA:   3'- uaCUGUAGGggCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 110167 0.75 0.20789
Target:  5'- -gGACGucuUCCCCgaccucugcggcgGCCGCgacgCGCCGCCGCCc -3'
miRNA:   3'- uaCUGU---AGGGG-------------CGGCG----GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 128486 0.75 0.208364
Target:  5'- cUGcCAgCgCCGCUGCUGCUGCCGCCu -3'
miRNA:   3'- uACuGUaGgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 32539 0.74 0.232718
Target:  5'- gAUGACggCCCCGUCG-CGCCGgcgguauCCGCCg -3'
miRNA:   3'- -UACUGuaGGGGCGGCgGCGGC-------GGCGG- -5'
15692 5' -64.7 NC_004065.1 + 97613 0.74 0.233239
Target:  5'- -aGGCcgCCgCCGCUGCCGaagaGCCGCCc -3'
miRNA:   3'- uaCUGuaGG-GGCGGCGGCgg--CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 62578 0.74 0.238505
Target:  5'- aGUGACAgcagcagCCaguagguuagCGCCGCCGCCcCCGCCg -3'
miRNA:   3'- -UACUGUa------GGg---------GCGGCGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 30189 0.74 0.243869
Target:  5'- --aACAUCCCCGaaGCCGUCGUagCGCCu -3'
miRNA:   3'- uacUGUAGGGGCggCGGCGGCG--GCGG- -5'
15692 5' -64.7 NC_004065.1 + 109870 0.74 0.243869
Target:  5'- -gGGCGgugCCaCCGgCGUCGCCGCgGCCg -3'
miRNA:   3'- uaCUGUa--GG-GGCgGCGGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 73713 0.73 0.254899
Target:  5'- -----cUCCuCCGCCGCCGCUGCuggCGCCa -3'
miRNA:   3'- uacuguAGG-GGCGGCGGCGGCG---GCGG- -5'
15692 5' -64.7 NC_004065.1 + 42991 0.73 0.272207
Target:  5'- --cGCAUCaCCucagaCGCCG-CGCCGCCGCCa -3'
miRNA:   3'- uacUGUAG-GG-----GCGGCgGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 128152 0.73 0.278182
Target:  5'- cUGGCGUUacgCUCGCCggGCCGCCaGCCGCUg -3'
miRNA:   3'- uACUGUAG---GGGCGG--CGGCGG-CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 88422 0.72 0.284262
Target:  5'- -cGGCAgcggagCCCGCCGCCGUCGCguugguggcgguCGCCu -3'
miRNA:   3'- uaCUGUag----GGGCGGCGGCGGCG------------GCGG- -5'
15692 5' -64.7 NC_004065.1 + 6121 0.72 0.290446
Target:  5'- -gGAacCAUCa-CGCCGCCGCCGCCaGCUc -3'
miRNA:   3'- uaCU--GUAGggGCGGCGGCGGCGG-CGG- -5'
15692 5' -64.7 NC_004065.1 + 201033 0.72 0.290446
Target:  5'- -cGGCG-CCUCGCCaCCGCCGCCGg- -3'
miRNA:   3'- uaCUGUaGGGGCGGcGGCGGCGGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.