Results 121 - 140 of 374 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15692 | 5' | -64.7 | NC_004065.1 | + | 78627 | 0.7 | 0.387293 |
Target: 5'- -cGACcgaCCCGCCuCCGCCacccaagagaucgGCCGCCa -3' miRNA: 3'- uaCUGuagGGGCGGcGGCGG-------------CGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 83282 | 0.7 | 0.388063 |
Target: 5'- -cGACcggCCUCGCgGCgGCCGaCCGCUg -3' miRNA: 3'- uaCUGua-GGGGCGgCGgCGGC-GGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 74610 | 0.71 | 0.329762 |
Target: 5'- gGUGGCggccgaGUUCCCGgaaCCGCCGCCaCCGCUa -3' miRNA: 3'- -UACUG------UAGGGGC---GGCGGCGGcGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 48727 | 0.72 | 0.322946 |
Target: 5'- -cGACGUCCUCGuguCCGUCGUagcaguagaUGCCGCCg -3' miRNA: 3'- uaCUGUAGGGGC---GGCGGCG---------GCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 124316 | 0.72 | 0.322946 |
Target: 5'- -gGAUGUCgUgGuUCGCCGUCGCCGCCa -3' miRNA: 3'- uaCUGUAGgGgC-GGCGGCGGCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 109870 | 0.74 | 0.243869 |
Target: 5'- -gGGCGgugCCaCCGgCGUCGCCGCgGCCg -3' miRNA: 3'- uaCUGUa--GG-GGCgGCGGCGGCGgCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 73713 | 0.73 | 0.254899 |
Target: 5'- -----cUCCuCCGCCGCCGCUGCuggCGCCa -3' miRNA: 3'- uacuguAGG-GGCGGCGGCGGCG---GCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 42991 | 0.73 | 0.272207 |
Target: 5'- --cGCAUCaCCucagaCGCCG-CGCCGCCGCCa -3' miRNA: 3'- uacUGUAG-GG-----GCGGCgGCGGCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 128152 | 0.73 | 0.278182 |
Target: 5'- cUGGCGUUacgCUCGCCggGCCGCCaGCCGCUg -3' miRNA: 3'- uACUGUAG---GGGCGG--CGGCGG-CGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 88422 | 0.72 | 0.284262 |
Target: 5'- -cGGCAgcggagCCCGCCGCCGUCGCguugguggcgguCGCCu -3' miRNA: 3'- uaCUGUag----GGGCGGCGGCGGCG------------GCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 6121 | 0.72 | 0.290446 |
Target: 5'- -gGAacCAUCa-CGCCGCCGCCGCCaGCUc -3' miRNA: 3'- uaCU--GUAGggGCGGCGGCGGCGG-CGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 201033 | 0.72 | 0.290446 |
Target: 5'- -cGGCG-CCUCGCCaCCGCCGCCGg- -3' miRNA: 3'- uaCUGUaGGGGCGGcGGCGGCGGCgg -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 118314 | 0.7 | 0.388063 |
Target: 5'- -cGGCGUUCUCGUCGCCaGCgGgaCCGCCg -3' miRNA: 3'- uaCUGUAGGGGCGGCGG-CGgC--GGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 97006 | 0.72 | 0.290446 |
Target: 5'- -cGACGUCU--GCUGCCGCUGCUGCUa -3' miRNA: 3'- uaCUGUAGGggCGGCGGCGGCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 114319 | 0.72 | 0.290446 |
Target: 5'- gAUGucCAUCCUgGCgGCCGCCGCgaaacagaaCGCCg -3' miRNA: 3'- -UACu-GUAGGGgCGgCGGCGGCG---------GCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 173872 | 0.72 | 0.290446 |
Target: 5'- -aGGCG-CCgucaCGCCguguguguggGCCGCCGCCGCCu -3' miRNA: 3'- uaCUGUaGGg---GCGG----------CGGCGGCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 76366 | 0.72 | 0.290446 |
Target: 5'- -cGAUcUCCaucgCGCCGgCGCCGCCGCg -3' miRNA: 3'- uaCUGuAGGg---GCGGCgGCGGCGGCGg -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 221267 | 0.72 | 0.296735 |
Target: 5'- -gGAUAUgaaCCCUGCCGCCGCCaCCacgGCCu -3' miRNA: 3'- uaCUGUA---GGGGCGGCGGCGGcGG---CGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 90103 | 0.72 | 0.309629 |
Target: 5'- -aGACGaaguucaaCCCGCUGgCGCCGCCgGCCg -3' miRNA: 3'- uaCUGUag------GGGCGGCgGCGGCGG-CGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 114435 | 0.72 | 0.309629 |
Target: 5'- -aGuauCAUCuCCCGCCGCCaccaccaCCGCCGUCu -3' miRNA: 3'- uaCu--GUAG-GGGCGGCGGc------GGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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