miRNA display CGI


Results 41 - 60 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 75735 0.76 0.17741
Target:  5'- cUGA--UCCUCGCCGCCGCCaUCGCCc -3'
miRNA:   3'- uACUguAGGGGCGGCGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 129020 0.79 0.09998
Target:  5'- -cGACGgcgCCCUcaacgcuGCCGCUGCCGCUGCCg -3'
miRNA:   3'- uaCUGUa--GGGG-------CGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 154413 0.87 0.02749
Target:  5'- --aACAgCCgCCGCCGCCGCCGCCGCCa -3'
miRNA:   3'- uacUGUaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 25123 0.76 0.165441
Target:  5'- -cGACuuugCCaCCgucgagGCCGCCGUCGCCGCCa -3'
miRNA:   3'- uaCUGua--GG-GG------CGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 67932 0.88 0.026804
Target:  5'- gAUGGagggCCCGCCGCCGCCGCCGCCg -3'
miRNA:   3'- -UACUguagGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 127469 0.72 0.322946
Target:  5'- ----gAUCCUCGCgGCCGCCGCUcCCg -3'
miRNA:   3'- uacugUAGGGGCGgCGGCGGCGGcGG- -5'
15692 5' -64.7 NC_004065.1 + 30234 0.87 0.031983
Target:  5'- -cGAUA-CCaCUGCCGCCGCCGCCGCCg -3'
miRNA:   3'- uaCUGUaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 82246 0.72 0.303129
Target:  5'- -gGGCGccuUCCCCGCCGCCGaaaaCGUCGaCg -3'
miRNA:   3'- uaCUGU---AGGGGCGGCGGCg---GCGGCgG- -5'
15692 5' -64.7 NC_004065.1 + 20980 0.72 0.284262
Target:  5'- -cGugAUCgCCGUCGUCGCCGUCgguGCCg -3'
miRNA:   3'- uaCugUAGgGGCGGCGGCGGCGG---CGG- -5'
15692 5' -64.7 NC_004065.1 + 142261 0.73 0.276379
Target:  5'- -cGACGUCgucgacgaUCCGCCGCgguaucgucgucauCGCCGUCGCCu -3'
miRNA:   3'- uaCUGUAG--------GGGCGGCG--------------GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 78854 0.74 0.232718
Target:  5'- -gGugGUCgaccucuuuucugCCCGCCGUCGCUGuuGCCa -3'
miRNA:   3'- uaCugUAG-------------GGGCGGCGGCGGCggCGG- -5'
15692 5' -64.7 NC_004065.1 + 24338 0.75 0.193227
Target:  5'- -gGACGUCCUCggcaucaucaucgaGCCGCUcauGCUGCCGCCg -3'
miRNA:   3'- uaCUGUAGGGG--------------CGGCGG---CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 151175 0.76 0.181568
Target:  5'- -cGACAa-CCCGCCGgaGCCGCCGUCg -3'
miRNA:   3'- uaCUGUagGGGCGGCggCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 64467 0.76 0.161237
Target:  5'- ----uGUCCUCGCCGCCGacacugccuccgcCCGCCGCCu -3'
miRNA:   3'- uacugUAGGGGCGGCGGC-------------GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 45796 0.78 0.133779
Target:  5'- -gGGCggCUgCCGCCGCCGCCGCggCGCCg -3'
miRNA:   3'- uaCUGuaGG-GGCGGCGGCGGCG--GCGG- -5'
15692 5' -64.7 NC_004065.1 + 100904 0.79 0.110418
Target:  5'- -cGACgugcgaGUCCCUGUucuCGCCGCUGCCGCCg -3'
miRNA:   3'- uaCUG------UAGGGGCG---GCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 24795 0.79 0.107782
Target:  5'- -gGGCucGUCUCCGCUGCCgucgucgcuGCCGCCGCCa -3'
miRNA:   3'- uaCUG--UAGGGGCGGCGG---------CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 127398 0.81 0.080444
Target:  5'- -gGGCgAUCgCCGCCGCCgguagcGCCGCCGCCg -3'
miRNA:   3'- uaCUG-UAGgGGCGGCGG------CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 70371 0.83 0.059808
Target:  5'- -cGAUcggCgCCGCCGCCGCCGCUGCCg -3'
miRNA:   3'- uaCUGua-GgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 168818 0.85 0.040007
Target:  5'- -aGACGcccgcugUCgCCGCCGCCGCCGCUGCCa -3'
miRNA:   3'- uaCUGU-------AGgGGCGGCGGCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.