miRNA display CGI


Results 61 - 80 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 151175 0.76 0.181568
Target:  5'- -cGACAa-CCCGCCGgaGCCGCCGUCg -3'
miRNA:   3'- uaCUGUagGGGCGGCggCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 120817 0.75 0.208364
Target:  5'- -gGAgGUCccgCCCGCucgCGCCGaCCGCCGCCg -3'
miRNA:   3'- uaCUgUAG---GGGCG---GCGGC-GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 56977 0.85 0.038143
Target:  5'- -aGACAgCUgCUGCCGCCGCCGCCGCCg -3'
miRNA:   3'- uaCUGUaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 128668 0.85 0.040107
Target:  5'- gGUGGCggCgCCGCCGCCGCUGCCGCUc -3'
miRNA:   3'- -UACUGuaGgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 62344 0.82 0.066043
Target:  5'- -cGACcgCCgCUGCCGCUGCCGUCGCCc -3'
miRNA:   3'- uaCUGuaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 166407 0.8 0.086583
Target:  5'- -aGACGUCggcgCCGCUGCCGCCGgCGCCg -3'
miRNA:   3'- uaCUGUAGg---GGCGGCGGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 71942 0.79 0.107782
Target:  5'- -gGACGcgccgCuCCCGuuGCCGCCGCCGCUg -3'
miRNA:   3'- uaCUGUa----G-GGGCggCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 135398 0.79 0.113115
Target:  5'- -cGACGUCCCCGUCGUCaucacCCGCCGCg -3'
miRNA:   3'- uaCUGUAGGGGCGGCGGc----GGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 96531 0.78 0.133779
Target:  5'- cGUGACG-CCCCugGCCGCC-CCGCCGUCc -3'
miRNA:   3'- -UACUGUaGGGG--CGGCGGcGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 122080 0.76 0.161615
Target:  5'- -aGACAUCCCCGCCaCCuCCGuCCGCa -3'
miRNA:   3'- uaCUGUAGGGGCGGcGGcGGC-GGCGg -5'
15692 5' -64.7 NC_004065.1 + 137205 0.7 0.403659
Target:  5'- -cGGCAguccuUUCCUGCCGUCGUagCGCCGCa -3'
miRNA:   3'- uaCUGU-----AGGGGCGGCGGCG--GCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 135316 0.7 0.395811
Target:  5'- -gGGCccgCUCCGCgGCUGCCGCguaCGCCu -3'
miRNA:   3'- uaCUGua-GGGGCGgCGGCGGCG---GCGG- -5'
15692 5' -64.7 NC_004065.1 + 138816 0.73 0.260566
Target:  5'- -gGACGgcaCCGUCGCCGucaguCCGCCGCCg -3'
miRNA:   3'- uaCUGUaggGGCGGCGGC-----GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 68838 0.73 0.278182
Target:  5'- -cGGCGcUCUggaUCGCCGCCGCCGCguugcuCGCCa -3'
miRNA:   3'- uaCUGU-AGG---GGCGGCGGCGGCG------GCGG- -5'
15692 5' -64.7 NC_004065.1 + 82246 0.72 0.303129
Target:  5'- -gGGCGccuUCCCCGCCGCCGaaaaCGUCGaCg -3'
miRNA:   3'- uaCUGU---AGGGGCGGCGGCg---GCGGCgG- -5'
15692 5' -64.7 NC_004065.1 + 127469 0.72 0.322946
Target:  5'- ----gAUCCUCGCgGCCGCCGCUcCCg -3'
miRNA:   3'- uacugUAGGGGCGgCGGCGGCGGcGG- -5'
15692 5' -64.7 NC_004065.1 + 62721 0.71 0.336685
Target:  5'- -cGGCcgCuCCUGCCGUCGCCGgUGCUu -3'
miRNA:   3'- uaCUGuaG-GGGCGGCGGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 116400 0.71 0.343712
Target:  5'- -cGACccggCCCCgaGCCGCCGCaggaCGCCGaCCa -3'
miRNA:   3'- uaCUGua--GGGG--CGGCGGCG----GCGGC-GG- -5'
15692 5' -64.7 NC_004065.1 + 31359 0.7 0.375874
Target:  5'- -gGugGUgCCUGCCcgcuccacccuggcgGCCaagGCCGCCGCCa -3'
miRNA:   3'- uaCugUAgGGGCGG---------------CGG---CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 96911 0.7 0.383461
Target:  5'- -gGGCGagCCCGCCGaCGCCGagaaagagcucgcgaCCGCCg -3'
miRNA:   3'- uaCUGUagGGGCGGCgGCGGC---------------GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.