miRNA display CGI


Results 81 - 100 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 201055 0.73 0.27758
Target:  5'- ----gAUCCCCGCgccgagaCGCCGUCGCcCGCCa -3'
miRNA:   3'- uacugUAGGGGCG-------GCGGCGGCG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 128818 0.72 0.296735
Target:  5'- -cGACGUCgCUGCCGCUGCgGgCGCa -3'
miRNA:   3'- uaCUGUAGgGGCGGCGGCGgCgGCGg -5'
15692 5' -64.7 NC_004065.1 + 97023 0.72 0.316234
Target:  5'- -aGACggCCgcgaugCCGCCuCCGCCGUCGCCc -3'
miRNA:   3'- uaCUGuaGG------GGCGGcGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 115461 0.71 0.329762
Target:  5'- -cGGCGguaugCCCCGUCGCgGCgGCCacgGCCg -3'
miRNA:   3'- uaCUGUa----GGGGCGGCGgCGgCGG---CGG- -5'
15692 5' -64.7 NC_004065.1 + 27023 0.71 0.336685
Target:  5'- uGUGAaucauaAUCUCCGUCGUCGUCGUCGUCc -3'
miRNA:   3'- -UACUg-----UAGGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 31359 0.7 0.375874
Target:  5'- -gGugGUgCCUGCCcgcuccacccuggcgGCCaagGCCGCCGCCa -3'
miRNA:   3'- uaCugUAgGGGCGG---------------CGG---CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 96911 0.7 0.383461
Target:  5'- -gGGCGagCCCGCCGaCGCCGagaaagagcucgcgaCCGCCg -3'
miRNA:   3'- uaCUGUagGGGCGGCgGCGGC---------------GGCGG- -5'
15692 5' -64.7 NC_004065.1 + 122080 0.76 0.161615
Target:  5'- -aGACAUCCCCGCCaCCuCCGuCCGCa -3'
miRNA:   3'- uaCUGUAGGGGCGGcGGcGGC-GGCGg -5'
15692 5' -64.7 NC_004065.1 + 96531 0.78 0.133779
Target:  5'- cGUGACG-CCCCugGCCGCC-CCGCCGUCc -3'
miRNA:   3'- -UACUGUaGGGG--CGGCGGcGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 135398 0.79 0.113115
Target:  5'- -cGACGUCCCCGUCGUCaucacCCGCCGCg -3'
miRNA:   3'- uaCUGUAGGGGCGGCGGc----GGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 195105 0.7 0.419646
Target:  5'- -aGAuCGUgUCCGCCGCCGUgGUCgGCCu -3'
miRNA:   3'- uaCU-GUAgGGGCGGCGGCGgCGG-CGG- -5'
15692 5' -64.7 NC_004065.1 + 142617 0.69 0.43601
Target:  5'- -cGACAcCCCCGaCCGCaucucugacggUGCucuCGCCGCCg -3'
miRNA:   3'- uaCUGUaGGGGC-GGCG-----------GCG---GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 128707 0.69 0.444329
Target:  5'- cUGAUcgCgCCCGCggaCGCCuCCGCCGCg -3'
miRNA:   3'- uACUGuaG-GGGCG---GCGGcGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 82153 0.69 0.452736
Target:  5'- -cGACGUCCaCGCCGaCCucaGCaCGCcCGCCg -3'
miRNA:   3'- uaCUGUAGGgGCGGC-GG---CG-GCG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 143039 0.69 0.46123
Target:  5'- gAUGGCcgcCCCCGgCGCCaccaccagcagGCCGUCGUCg -3'
miRNA:   3'- -UACUGua-GGGGCgGCGG-----------CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 56977 0.85 0.038143
Target:  5'- -aGACAgCUgCUGCCGCCGCCGCCGCCg -3'
miRNA:   3'- uaCUGUaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 128668 0.85 0.040107
Target:  5'- gGUGGCggCgCCGCCGCCGCUGCCGCUc -3'
miRNA:   3'- -UACUGuaGgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 62344 0.82 0.066043
Target:  5'- -cGACcgCCgCUGCCGCUGCCGUCGCCc -3'
miRNA:   3'- uaCUGuaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 166407 0.8 0.086583
Target:  5'- -aGACGUCggcgCCGCUGCCGCCGgCGCCg -3'
miRNA:   3'- uaCUGUAGg---GGCGGCGGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 71942 0.79 0.107782
Target:  5'- -gGACGcgccgCuCCCGuuGCCGCCGCCGCUg -3'
miRNA:   3'- uaCUGUa----G-GGGCggCGGCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.