Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15693 | 3' | -60.8 | NC_004065.1 | + | 93611 | 0.66 | 0.81058 |
Target: 5'- -aGCGAcGGGcgggucugGCCGGCGGCG-GG-CCGg -3' miRNA: 3'- ugCGCU-CCC--------UGGUCGUCGCaCCaGGU- -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 113642 | 0.69 | 0.625606 |
Target: 5'- uCGCGAGGGAgCcGCAgGCGUucguccugagGGUCCu -3' miRNA: 3'- uGCGCUCCCUgGuCGU-CGCA----------CCAGGu -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 127875 | 0.67 | 0.740154 |
Target: 5'- aGCGCGAGcGGugCAcGUagAGCGccGGUCCc -3' miRNA: 3'- -UGCGCUC-CCugGU-CG--UCGCa-CCAGGu -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 90377 | 0.67 | 0.749334 |
Target: 5'- cCGCGGGGccuccGGCCGGCGGCGccagcgGGUUgAa -3' miRNA: 3'- uGCGCUCC-----CUGGUCGUCGCa-----CCAGgU- -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 150331 | 0.67 | 0.752981 |
Target: 5'- uCGUGGagcugauggagaagcGGGACCGGCAG-GUGGacgCCAa -3' miRNA: 3'- uGCGCU---------------CCCUGGUCGUCgCACCa--GGU- -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 121354 | 0.67 | 0.758422 |
Target: 5'- uACGU---GGACCAGguGacgGUGGUCCAg -3' miRNA: 3'- -UGCGcucCCUGGUCguCg--CACCAGGU- -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 65901 | 0.67 | 0.758422 |
Target: 5'- cUGCGGcGGcAgCGGCAGCG-GGUCCGu -3' miRNA: 3'- uGCGCUcCC-UgGUCGUCGCaCCAGGU- -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 87967 | 0.66 | 0.765621 |
Target: 5'- gACGCaucGGGACCGGCAGCGauacuaccggcgGGUgCu -3' miRNA: 3'- -UGCGcu-CCCUGGUCGUCGCa-----------CCAgGu -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 68217 | 0.66 | 0.802207 |
Target: 5'- cUGCGGGGGuuucACCGGCAGCGacugcguggcGGUgCGg -3' miRNA: 3'- uGCGCUCCC----UGGUCGUCGCa---------CCAgGU- -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 164963 | 0.7 | 0.586956 |
Target: 5'- cGCGUGGuGGGACCGGCGGCGgcGG-Cg- -3' miRNA: 3'- -UGCGCU-CCCUGGUCGUCGCa-CCaGgu -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 88698 | 0.73 | 0.42075 |
Target: 5'- uGCGCGAGGcGACCgccaccaacgcgacGGCGGCG-GGcUCCGc -3' miRNA: 3'- -UGCGCUCC-CUGG--------------UCGUCGCaCC-AGGU- -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 38178 | 1.08 | 0.00196 |
Target: 5'- gACGCGAGGGACCAGCAGCGUGGUCCAg -3' miRNA: 3'- -UGCGCUCCCUGGUCGUCGCACCAGGU- -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 27688 | 0.66 | 0.802207 |
Target: 5'- gACGCGGuGGGACgGGCAGaGgcugGGUgCGa -3' miRNA: 3'- -UGCGCU-CCCUGgUCGUCgCa---CCAgGU- -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 59143 | 0.66 | 0.793697 |
Target: 5'- aGCGCGAGGcGACgA-CGGCGaGaGUCCGa -3' miRNA: 3'- -UGCGCUCC-CUGgUcGUCGCaC-CAGGU- -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 151231 | 0.66 | 0.793697 |
Target: 5'- gGCGCGGGGaaGACCucgAGCGUccaGGUCCu -3' miRNA: 3'- -UGCGCUCC--CUGGucgUCGCA---CCAGGu -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 150216 | 0.66 | 0.767411 |
Target: 5'- -aGCGGauccGGGCCAGCGGCGUcGUCa- -3' miRNA: 3'- ugCGCUc---CCUGGUCGUCGCAcCAGgu -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 27647 | 0.66 | 0.802207 |
Target: 5'- uGCGCGGGGGugCuGCGGCcc-GUCa- -3' miRNA: 3'- -UGCGCUCCCugGuCGUCGcacCAGgu -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 148835 | 0.69 | 0.644983 |
Target: 5'- uGCGCGuuGGGGAUCAGCucucccgacucGGUGUGGaaCCAg -3' miRNA: 3'- -UGCGC--UCCCUGGUCG-----------UCGCACCa-GGU- -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 130528 | 0.7 | 0.587918 |
Target: 5'- uGCGCGccAGGGACCccaacGGCGGCaucucgcacgucuccUGGUCCAa -3' miRNA: 3'- -UGCGC--UCCCUGG-----UCGUCGc--------------ACCAGGU- -5' |
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15693 | 3' | -60.8 | NC_004065.1 | + | 130860 | 0.71 | 0.520647 |
Target: 5'- aGCGCGAacuGGaGACCAGCcucgggcgccGGCGUgaGGUCCu -3' miRNA: 3'- -UGCGCU---CC-CUGGUCG----------UCGCA--CCAGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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