miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15693 5' -55.3 NC_004065.1 + 145738 0.66 0.977524
Target:  5'- gGCgGGAGCGgugaugagUGcGCCGAUCGCgucgcgCGCCg -3'
miRNA:   3'- aCG-CCUUGUa-------GCaCGGCUAGUG------GCGG- -5'
15693 5' -55.3 NC_004065.1 + 135073 0.66 0.977524
Target:  5'- cGCGGAGCGg---GCCccgCAgCGCCa -3'
miRNA:   3'- aCGCCUUGUagcaCGGcuaGUgGCGG- -5'
15693 5' -55.3 NC_004065.1 + 133394 0.66 0.977524
Target:  5'- gGCGcGAACGUgGUGUgGAUUuguuuggaCGCCg -3'
miRNA:   3'- aCGC-CUUGUAgCACGgCUAGug------GCGG- -5'
15693 5' -55.3 NC_004065.1 + 43433 0.66 0.977524
Target:  5'- uUGCGu--CGUCuGUGUCGGUguCUGCCg -3'
miRNA:   3'- -ACGCcuuGUAG-CACGGCUAguGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 42836 0.66 0.977524
Target:  5'- gUGCGGAGgGUCG-GUCGAg-ACC-CCu -3'
miRNA:   3'- -ACGCCUUgUAGCaCGGCUagUGGcGG- -5'
15693 5' -55.3 NC_004065.1 + 49656 0.66 0.977524
Target:  5'- gGUGGAcCAguuuccCGUGgCGGU-GCCGCCg -3'
miRNA:   3'- aCGCCUuGUa-----GCACgGCUAgUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 195082 0.66 0.977524
Target:  5'- gGCcuGGAGaa-CGUGgCGGcCACCGCCa -3'
miRNA:   3'- aCG--CCUUguaGCACgGCUaGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 207783 0.66 0.977524
Target:  5'- cGCGGAGCGcgCGgcgaggagGaCCGAcgACCGCUa -3'
miRNA:   3'- aCGCCUUGUa-GCa-------C-GGCUagUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 100205 0.66 0.977524
Target:  5'- cGCGGcgGugGUCGacuacggcgaUGCCGuUCGgCGCCc -3'
miRNA:   3'- aCGCC--UugUAGC----------ACGGCuAGUgGCGG- -5'
15693 5' -55.3 NC_004065.1 + 153170 0.66 0.977524
Target:  5'- cGCGGcGGCAgCGccGCCGA-CAUCGUCa -3'
miRNA:   3'- aCGCC-UUGUaGCa-CGGCUaGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 97694 0.66 0.977524
Target:  5'- cGCGG----UCGcUGCCGc-CGCCGCCc -3'
miRNA:   3'- aCGCCuuguAGC-ACGGCuaGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 227530 0.66 0.977524
Target:  5'- aGCGG-ACGUCGggggGUCGGUCucauCCGg- -3'
miRNA:   3'- aCGCCuUGUAGCa---CGGCUAGu---GGCgg -5'
15693 5' -55.3 NC_004065.1 + 229933 0.66 0.977524
Target:  5'- gGCGGGcuGCAcuuuuUUGccGCCGAgggCGCCGCg -3'
miRNA:   3'- aCGCCU--UGU-----AGCa-CGGCUa--GUGGCGg -5'
15693 5' -55.3 NC_004065.1 + 201214 0.66 0.976825
Target:  5'- cGCGGcGACGUgCGUGCagaggacccgCGAgcuguucuccuccgUCACCGUCa -3'
miRNA:   3'- aCGCC-UUGUA-GCACG----------GCU--------------AGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 28329 0.66 0.97611
Target:  5'- aGaCGGAcagggccuguccGCGUUGUGCCGccgcagccucgcuuUCGCgCGCCg -3'
miRNA:   3'- aC-GCCU------------UGUAGCACGGCu-------------AGUG-GCGG- -5'
15693 5' -55.3 NC_004065.1 + 153043 0.66 0.975132
Target:  5'- cGuCGGAGgucaGUCGacGUCGAuacuucUCACCGCCa -3'
miRNA:   3'- aC-GCCUUg---UAGCa-CGGCU------AGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 194803 0.66 0.975132
Target:  5'- cGCGGAACG--GUGUaCGGUUuCUGCCu -3'
miRNA:   3'- aCGCCUUGUagCACG-GCUAGuGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 71346 0.66 0.975132
Target:  5'- cGCuGGAgaaguACAUCGUGgCG--CACCGCa -3'
miRNA:   3'- aCG-CCU-----UGUAGCACgGCuaGUGGCGg -5'
15693 5' -55.3 NC_004065.1 + 78887 0.66 0.975132
Target:  5'- cGCGGAGCG-CGUGCac--CACCuGCa -3'
miRNA:   3'- aCGCCUUGUaGCACGgcuaGUGG-CGg -5'
15693 5' -55.3 NC_004065.1 + 133700 0.66 0.975132
Target:  5'- gGCGGAACaAUCGcagaacgagGCCGA-CG-CGCCc -3'
miRNA:   3'- aCGCCUUG-UAGCa--------CGGCUaGUgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.