miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15693 5' -55.3 NC_004065.1 + 201544 0.66 0.966847
Target:  5'- cGCGGcGCuGUCG-GCCaGAcgccacaacUCGCCGCUg -3'
miRNA:   3'- aCGCCuUG-UAGCaCGG-CU---------AGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 91834 0.66 0.972559
Target:  5'- aGCGGGG-GUCGUuCUGGUCGcCCGCg -3'
miRNA:   3'- aCGCCUUgUAGCAcGGCUAGU-GGCGg -5'
15693 5' -55.3 NC_004065.1 + 194362 0.66 0.972559
Target:  5'- cGC-GAGCGaCGUGgCGAUCGgCgGCCg -3'
miRNA:   3'- aCGcCUUGUaGCACgGCUAGU-GgCGG- -5'
15693 5' -55.3 NC_004065.1 + 150833 0.66 0.966847
Target:  5'- gGUGGAuCGUC-UGcCCGAUaCACgCGCCc -3'
miRNA:   3'- aCGCCUuGUAGcAC-GGCUA-GUG-GCGG- -5'
15693 5' -55.3 NC_004065.1 + 224553 0.66 0.968935
Target:  5'- cGUGGAugucgcccguguagGCGUucacguaguaCGU-CCGAUCGCCGUCg -3'
miRNA:   3'- aCGCCU--------------UGUA----------GCAcGGCUAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 97186 0.66 0.9698
Target:  5'- -uCGGGGC-UCGUcGUCGcgCugCGCCu -3'
miRNA:   3'- acGCCUUGuAGCA-CGGCuaGugGCGG- -5'
15693 5' -55.3 NC_004065.1 + 29112 0.66 0.971751
Target:  5'- cGUgGGGACAcUUGggagGCCGGUCGCCcagcgcgacgggcaGCCg -3'
miRNA:   3'- aCG-CCUUGU-AGCa---CGGCUAGUGG--------------CGG- -5'
15693 5' -55.3 NC_004065.1 + 88647 0.66 0.9698
Target:  5'- cGUcGAGCcccGUCGaGUCGAgCGCCGCCa -3'
miRNA:   3'- aCGcCUUG---UAGCaCGGCUaGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 88426 0.66 0.974883
Target:  5'- aGCGGAgcccgccgccgucGCGUUgGUGgCGGUCGCCucgcgcagagagGCCa -3'
miRNA:   3'- aCGCCU-------------UGUAG-CACgGCUAGUGG------------CGG- -5'
15693 5' -55.3 NC_004065.1 + 124614 0.66 0.966847
Target:  5'- cGCGGccAGCAgCGgguUGuuGGUCAgCGCCu -3'
miRNA:   3'- aCGCC--UUGUaGC---ACggCUAGUgGCGG- -5'
15693 5' -55.3 NC_004065.1 + 43433 0.66 0.977524
Target:  5'- uUGCGu--CGUCuGUGUCGGUguCUGCCg -3'
miRNA:   3'- -ACGCcuuGUAG-CACGGCUAguGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 105698 0.66 0.966847
Target:  5'- aGgGGuuCAUCGggaggGCUGAUCuCCGCg -3'
miRNA:   3'- aCgCCuuGUAGCa----CGGCUAGuGGCGg -5'
15693 5' -55.3 NC_004065.1 + 169361 0.66 0.968935
Target:  5'- aGUGGAuccguauguccgagACGUCGguaUGCCuGUCGCUGCa -3'
miRNA:   3'- aCGCCU--------------UGUAGC---ACGGcUAGUGGCGg -5'
15693 5' -55.3 NC_004065.1 + 38094 0.66 0.967151
Target:  5'- gGCuGGAGCugucggcguucuucuUCGUGCCGuacGUCG-CGCCg -3'
miRNA:   3'- aCG-CCUUGu--------------AGCACGGC---UAGUgGCGG- -5'
15693 5' -55.3 NC_004065.1 + 164122 0.66 0.965923
Target:  5'- -cCGGGGCGUC-UGCCGAgaucgagcaaacguUCACCGaCg -3'
miRNA:   3'- acGCCUUGUAGcACGGCU--------------AGUGGCgG- -5'
15693 5' -55.3 NC_004065.1 + 159666 0.66 0.962712
Target:  5'- aGgGGGACAUauagcuacccgaggCGcuccucGCCGccGUCGCCGCCg -3'
miRNA:   3'- aCgCCUUGUA--------------GCa-----CGGC--UAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 91250 0.66 0.966847
Target:  5'- aGCGGGACcuugacgccAUCGaccgcGCCGAccugcaccuUCACgGCCu -3'
miRNA:   3'- aCGCCUUG---------UAGCa----CGGCU---------AGUGgCGG- -5'
15693 5' -55.3 NC_004065.1 + 113433 0.66 0.9698
Target:  5'- cGCaGAGCggCG-GCCGGggggC-CCGCCg -3'
miRNA:   3'- aCGcCUUGuaGCaCGGCUa---GuGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 163249 0.66 0.974883
Target:  5'- cGCgGGAGCAUCGUcuguaacaagaccGUcucuuCGGUCgcgacGCCGCCg -3'
miRNA:   3'- aCG-CCUUGUAGCA-------------CG-----GCUAG-----UGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 124464 0.66 0.963697
Target:  5'- cGaCGGcGCGcCGUGCCG--CugCGCCg -3'
miRNA:   3'- aC-GCCuUGUaGCACGGCuaGugGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.