miRNA display CGI


Results 21 - 40 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15693 5' -55.3 NC_004065.1 + 113433 0.66 0.9698
Target:  5'- cGCaGAGCggCG-GCCGGggggC-CCGCCg -3'
miRNA:   3'- aCGcCUUGuaGCaCGGCUa---GuGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 88647 0.66 0.9698
Target:  5'- cGUcGAGCcccGUCGaGUCGAgCGCCGCCa -3'
miRNA:   3'- aCGcCUUG---UAGCaCGGCUaGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 229423 0.66 0.966847
Target:  5'- cGCGGAGCGcaugacUGCCGggCGagggcgccCCGCCg -3'
miRNA:   3'- aCGCCUUGUagc---ACGGCuaGU--------GGCGG- -5'
15693 5' -55.3 NC_004065.1 + 73390 0.66 0.963697
Target:  5'- cUGgGGucgcGCGUCGgggucCCGAUCcuCCGCCg -3'
miRNA:   3'- -ACgCCu---UGUAGCac---GGCUAGu-GGCGG- -5'
15693 5' -55.3 NC_004065.1 + 190824 0.66 0.975132
Target:  5'- cUGCGacgcGACAcCGUGCgCGAgaaauaaccaCGCCGCCg -3'
miRNA:   3'- -ACGCc---UUGUaGCACG-GCUa---------GUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 28329 0.66 0.97611
Target:  5'- aGaCGGAcagggccuguccGCGUUGUGCCGccgcagccucgcuuUCGCgCGCCg -3'
miRNA:   3'- aC-GCCU------------UGUAGCACGGCu-------------AGUG-GCGG- -5'
15693 5' -55.3 NC_004065.1 + 34786 0.66 0.963697
Target:  5'- cUGCGaGAucgacuACGUCGUGCCcggCGgUGCCg -3'
miRNA:   3'- -ACGC-CU------UGUAGCACGGcuaGUgGCGG- -5'
15693 5' -55.3 NC_004065.1 + 135073 0.66 0.977524
Target:  5'- cGCGGAGCGg---GCCccgCAgCGCCa -3'
miRNA:   3'- aCGCCUUGUagcaCGGcuaGUgGCGG- -5'
15693 5' -55.3 NC_004065.1 + 211358 0.66 0.975132
Target:  5'- gGCGG-AC-UCGUGCguCGAUCACa-CCa -3'
miRNA:   3'- aCGCCuUGuAGCACG--GCUAGUGgcGG- -5'
15693 5' -55.3 NC_004065.1 + 229933 0.66 0.977524
Target:  5'- gGCGGGcuGCAcuuuuUUGccGCCGAgggCGCCGCg -3'
miRNA:   3'- aCGCCU--UGU-----AGCa-CGGCUa--GUGGCGg -5'
15693 5' -55.3 NC_004065.1 + 201214 0.66 0.976825
Target:  5'- cGCGGcGACGUgCGUGCagaggacccgCGAgcuguucuccuccgUCACCGUCa -3'
miRNA:   3'- aCGCC-UUGUA-GCACG----------GCU--------------AGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 185950 0.66 0.963697
Target:  5'- -cCGGucaccAGCAUcCGUGCagaGAaCACCGCCg -3'
miRNA:   3'- acGCC-----UUGUA-GCACGg--CUaGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 29112 0.66 0.971751
Target:  5'- cGUgGGGACAcUUGggagGCCGGUCGCCcagcgcgacgggcaGCCg -3'
miRNA:   3'- aCG-CCUUGU-AGCa---CGGCUAGUGG--------------CGG- -5'
15693 5' -55.3 NC_004065.1 + 91834 0.66 0.972559
Target:  5'- aGCGGGG-GUCGUuCUGGUCGcCCGCg -3'
miRNA:   3'- aCGCCUUgUAGCAcGGCUAGU-GGCGg -5'
15693 5' -55.3 NC_004065.1 + 164122 0.66 0.965923
Target:  5'- -cCGGGGCGUC-UGCCGAgaucgagcaaacguUCACCGaCg -3'
miRNA:   3'- acGCCUUGUAGcACGGCU--------------AGUGGCgG- -5'
15693 5' -55.3 NC_004065.1 + 59974 0.66 0.975132
Target:  5'- gGCGGcuuCGUCG-GCCGAgcaGCCGgUg -3'
miRNA:   3'- aCGCCuu-GUAGCaCGGCUag-UGGCgG- -5'
15693 5' -55.3 NC_004065.1 + 97186 0.66 0.9698
Target:  5'- -uCGGGGC-UCGUcGUCGcgCugCGCCu -3'
miRNA:   3'- acGCCUUGuAGCA-CGGCuaGugGCGG- -5'
15693 5' -55.3 NC_004065.1 + 42836 0.66 0.977524
Target:  5'- gUGCGGAGgGUCG-GUCGAg-ACC-CCu -3'
miRNA:   3'- -ACGCCUUgUAGCaCGGCUagUGGcGG- -5'
15693 5' -55.3 NC_004065.1 + 159666 0.66 0.962712
Target:  5'- aGgGGGACAUauagcuacccgaggCGcuccucGCCGccGUCGCCGCCg -3'
miRNA:   3'- aCgCCUUGUA--------------GCa-----CGGC--UAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 124464 0.66 0.963697
Target:  5'- cGaCGGcGCGcCGUGCCG--CugCGCCg -3'
miRNA:   3'- aC-GCCuUGUaGCACGGCuaGugGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.