miRNA display CGI


Results 1 - 20 of 239 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15693 5' -55.3 NC_004065.1 + 38129 1.13 0.003287
Target:  5'- gUGCGGAACAUCGUGCCGAUCACCGCCg -3'
miRNA:   3'- -ACGCCUUGUAGCACGGCUAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 201363 0.79 0.402053
Target:  5'- gGCGG-ACAUCGUGCCucGGUUcaaggaaaGCCGCCg -3'
miRNA:   3'- aCGCCuUGUAGCACGG--CUAG--------UGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 114666 0.78 0.444022
Target:  5'- gGCGGGGagaccgcUAUCGgGCCGAUCGcCCGCCu -3'
miRNA:   3'- aCGCCUU-------GUAGCaCGGCUAGU-GGCGG- -5'
15693 5' -55.3 NC_004065.1 + 76078 0.78 0.460946
Target:  5'- cUGCGGGucccucaucuguCGUCGUGCCaGGugccUCGCCGCCg -3'
miRNA:   3'- -ACGCCUu-----------GUAGCACGG-CU----AGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 24580 0.78 0.453778
Target:  5'- cGCGGuccGCG-CGUGUCG-UCGCCGCCa -3'
miRNA:   3'- aCGCCu--UGUaGCACGGCuAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 124313 0.77 0.471809
Target:  5'- cGCGG-AUGUCGUgguucGCCG-UCGCCGCCa -3'
miRNA:   3'- aCGCCuUGUAGCA-----CGGCuAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 101849 0.77 0.518377
Target:  5'- cGCgGGGGCGUCGgggGCgCuAUCGCCGCCg -3'
miRNA:   3'- aCG-CCUUGUAGCa--CG-GcUAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 214526 0.76 0.527915
Target:  5'- cUGCGGAgaaACAuccguUCGUGCU--UCGCCGCCu -3'
miRNA:   3'- -ACGCCU---UGU-----AGCACGGcuAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 126151 0.75 0.603123
Target:  5'- cUGCGaGAaguccgccaugaucGCGUgGUGCgCGAUCGCCGUCa -3'
miRNA:   3'- -ACGC-CU--------------UGUAgCACG-GCUAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 101136 0.75 0.616017
Target:  5'- uUGCGGAACcgCGaGCCGuUCAuggUCGCCa -3'
miRNA:   3'- -ACGCCUUGuaGCaCGGCuAGU---GGCGG- -5'
15693 5' -55.3 NC_004065.1 + 63666 0.75 0.586317
Target:  5'- -cCGGAGCGaCGUGCCuGAUCACCuGCUc -3'
miRNA:   3'- acGCCUUGUaGCACGG-CUAGUGG-CGG- -5'
15693 5' -55.3 NC_004065.1 + 138819 0.74 0.645819
Target:  5'- aGCGGAcgGCAcCGUcGCCGucagucCGCCGCCg -3'
miRNA:   3'- aCGCCU--UGUaGCA-CGGCua----GUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 128839 0.74 0.645819
Target:  5'- gUGCGGAuGCGccuUCGccGCCGAcgUCGCUGCCg -3'
miRNA:   3'- -ACGCCU-UGU---AGCa-CGGCU--AGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 74426 0.74 0.655742
Target:  5'- gGCGGu-CAUCG-GCuCGAaCGCCGCCu -3'
miRNA:   3'- aCGCCuuGUAGCaCG-GCUaGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 99988 0.74 0.675528
Target:  5'- cGCGGGuCGUCGUcuucgucguaGCCGc-CGCCGCCg -3'
miRNA:   3'- aCGCCUuGUAGCA----------CGGCuaGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 66847 0.74 0.655742
Target:  5'- gGCGGAGagGUaCGUGCCGGgaaAUCGCCg -3'
miRNA:   3'- aCGCCUUg-UA-GCACGGCUag-UGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 104137 0.74 0.634892
Target:  5'- aGCGGAuccucguCGUCGccuuccgcggcggUGUCGGUCGCCGCUu -3'
miRNA:   3'- aCGCCUu------GUAGC-------------ACGGCUAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 197250 0.73 0.724264
Target:  5'- aGCGGGugG-CGUGCCGAUagGgUGCCg -3'
miRNA:   3'- aCGCCUugUaGCACGGCUAg-UgGCGG- -5'
15693 5' -55.3 NC_004065.1 + 74172 0.73 0.704935
Target:  5'- gGCGGcgu-UCGaGCCGAUgACCGCCc -3'
miRNA:   3'- aCGCCuuguAGCaCGGCUAgUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 71748 0.73 0.721382
Target:  5'- cGCGGcgcuaccggucgguGACcgUGUuggcGUCGAUCGCCGCCa -3'
miRNA:   3'- aCGCC--------------UUGuaGCA----CGGCUAGUGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.