miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15693 5' -55.3 NC_004065.1 + 191304 0.71 0.797915
Target:  5'- gGCGGAGCAggaUgGUGCCG---GCCGCg -3'
miRNA:   3'- aCGCCUUGU---AgCACGGCuagUGGCGg -5'
15693 5' -55.3 NC_004065.1 + 71748 0.73 0.721382
Target:  5'- cGCGGcgcuaccggucgguGACcgUGUuggcGUCGAUCGCCGCCa -3'
miRNA:   3'- aCGCC--------------UUGuaGCA----CGGCUAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 197250 0.73 0.724264
Target:  5'- aGCGGGugG-CGUGCCGAUagGgUGCCg -3'
miRNA:   3'- aCGCCUugUaGCACGGCUAg-UgGCGG- -5'
15693 5' -55.3 NC_004065.1 + 27400 0.72 0.743293
Target:  5'- aGCGGcGGCAUCGUcGUCGAcuccUCAUCGCa -3'
miRNA:   3'- aCGCC-UUGUAGCA-CGGCU----AGUGGCGg -5'
15693 5' -55.3 NC_004065.1 + 93332 0.72 0.761956
Target:  5'- gGCGGAuaaaaGC-UCGaGCCGGccCGCCGCCg -3'
miRNA:   3'- aCGCCU-----UGuAGCaCGGCUa-GUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 189372 0.72 0.761956
Target:  5'- cGUGaAGCAagaUCGUGCCGuucggcGUCACCGUCg -3'
miRNA:   3'- aCGCcUUGU---AGCACGGC------UAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 124547 0.72 0.780186
Target:  5'- gGUGGAACAgcuccUCG-GCCGccugguUCGCCGUCa -3'
miRNA:   3'- aCGCCUUGU-----AGCaCGGCu-----AGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 33671 0.71 0.789117
Target:  5'- aGCGGGACAUgGagGCCGAgcgaUCGuaGCCg -3'
miRNA:   3'- aCGCCUUGUAgCa-CGGCU----AGUggCGG- -5'
15693 5' -55.3 NC_004065.1 + 224277 0.71 0.789117
Target:  5'- cUGCGGAGCAgcgcuagcgCGuUGCCGAUCAgCacgauccccaggGCCa -3'
miRNA:   3'- -ACGCCUUGUa--------GC-ACGGCUAGUgG------------CGG- -5'
15693 5' -55.3 NC_004065.1 + 74172 0.73 0.704935
Target:  5'- gGCGGcgu-UCGaGCCGAUgACCGCCc -3'
miRNA:   3'- aCGCCuuguAGCaCGGCUAgUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 76760 0.73 0.69518
Target:  5'- gGCGGccucguCAUCGU-CCGGcgcaUCGCCGCCg -3'
miRNA:   3'- aCGCCuu----GUAGCAcGGCU----AGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 99934 0.73 0.685375
Target:  5'- gGCGGGcgccgaacgGCAUCGccguaGUCGAcCACCGCCg -3'
miRNA:   3'- aCGCCU---------UGUAGCa----CGGCUaGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 24580 0.78 0.453778
Target:  5'- cGCGGuccGCG-CGUGUCG-UCGCCGCCa -3'
miRNA:   3'- aCGCCu--UGUaGCACGGCuAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 124313 0.77 0.471809
Target:  5'- cGCGG-AUGUCGUgguucGCCG-UCGCCGCCa -3'
miRNA:   3'- aCGCCuUGUAGCA-----CGGCuAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 101849 0.77 0.518377
Target:  5'- cGCgGGGGCGUCGgggGCgCuAUCGCCGCCg -3'
miRNA:   3'- aCG-CCUUGUAGCa--CG-GcUAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 126151 0.75 0.603123
Target:  5'- cUGCGaGAaguccgccaugaucGCGUgGUGCgCGAUCGCCGUCa -3'
miRNA:   3'- -ACGC-CU--------------UGUAgCACG-GCUAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 101136 0.75 0.616017
Target:  5'- uUGCGGAACcgCGaGCCGuUCAuggUCGCCa -3'
miRNA:   3'- -ACGCCUUGuaGCaCGGCuAGU---GGCGG- -5'
15693 5' -55.3 NC_004065.1 + 104137 0.74 0.634892
Target:  5'- aGCGGAuccucguCGUCGccuuccgcggcggUGUCGGUCGCCGCUu -3'
miRNA:   3'- aCGCCUu------GUAGC-------------ACGGCUAGUGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 66847 0.74 0.655742
Target:  5'- gGCGGAGagGUaCGUGCCGGgaaAUCGCCg -3'
miRNA:   3'- aCGCCUUg-UA-GCACGGCUag-UGGCGG- -5'
15693 5' -55.3 NC_004065.1 + 99988 0.74 0.675528
Target:  5'- cGCGGGuCGUCGUcuucgucguaGCCGc-CGCCGCCg -3'
miRNA:   3'- aCGCCUuGUAGCA----------CGGCuaGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.