miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15694 3' -54.3 NC_004065.1 + 125381 0.66 0.979315
Target:  5'- --gGCUGGGCGaCGGCgcgguggugCCGGcGGCGu -3'
miRNA:   3'- guaCGACCCGUaGUUGa--------GGCCaCUGU- -5'
15694 3' -54.3 NC_004065.1 + 163309 0.66 0.977007
Target:  5'- --gGCacGGGCGccagccucUUGACUCUGGUGGCGg -3'
miRNA:   3'- guaCGa-CCCGU--------AGUUGAGGCCACUGU- -5'
15694 3' -54.3 NC_004065.1 + 39037 0.66 0.971832
Target:  5'- -cUGC-GGGCgccagaccGUCAGC-CCGGUGugGa -3'
miRNA:   3'- guACGaCCCG--------UAGUUGaGGCCACugU- -5'
15694 3' -54.3 NC_004065.1 + 29457 0.66 0.971832
Target:  5'- -cUGCgaGGGCGUCAugcagcuauucACUCUGG-GACu -3'
miRNA:   3'- guACGa-CCCGUAGU-----------UGAGGCCaCUGu -5'
15694 3' -54.3 NC_004065.1 + 207362 0.66 0.971832
Target:  5'- --aGC-GGGUGUCAcgcgGCaUCCGGUGAUg -3'
miRNA:   3'- guaCGaCCCGUAGU----UG-AGGCCACUGu -5'
15694 3' -54.3 NC_004065.1 + 125483 0.66 0.968951
Target:  5'- -----cGGGCAUCGAg-CUGGUGACGc -3'
miRNA:   3'- guacgaCCCGUAGUUgaGGCCACUGU- -5'
15694 3' -54.3 NC_004065.1 + 124276 0.66 0.968951
Target:  5'- -cUGCUGuacagcaccaaGGCGUCGACggCGGUGAUc -3'
miRNA:   3'- guACGAC-----------CCGUAGUUGagGCCACUGu -5'
15694 3' -54.3 NC_004065.1 + 200107 0.66 0.968951
Target:  5'- uCAUGaCgaagacGGCGUCGguccGCUCCuGGUGACAg -3'
miRNA:   3'- -GUAC-Gac----CCGUAGU----UGAGG-CCACUGU- -5'
15694 3' -54.3 NC_004065.1 + 62349 0.66 0.968951
Target:  5'- --gGCUGGGUcgucgguuuUCGACggCGGUGGCGg -3'
miRNA:   3'- guaCGACCCGu--------AGUUGagGCCACUGU- -5'
15694 3' -54.3 NC_004065.1 + 100769 0.67 0.965867
Target:  5'- --aGCUgugGGGCGggcUCAGCUUcgcgCGGUGACGu -3'
miRNA:   3'- guaCGA---CCCGU---AGUUGAG----GCCACUGU- -5'
15694 3' -54.3 NC_004065.1 + 63616 0.67 0.962573
Target:  5'- gGUGCUGGGCAucUCGAUcCCcGUGuCGa -3'
miRNA:   3'- gUACGACCCGU--AGUUGaGGcCACuGU- -5'
15694 3' -54.3 NC_004065.1 + 163448 0.67 0.960494
Target:  5'- cCGUGCagucggccacuucgaUGGGUagcucgagcuccGUCGGCggcgCCGGUGGCGg -3'
miRNA:   3'- -GUACG---------------ACCCG------------UAGUUGa---GGCCACUGU- -5'
15694 3' -54.3 NC_004065.1 + 67080 0.67 0.959064
Target:  5'- -cUGaUGGGCAUCGA-UCCGGUgcugGACAc -3'
miRNA:   3'- guACgACCCGUAGUUgAGGCCA----CUGU- -5'
15694 3' -54.3 NC_004065.1 + 32955 0.67 0.958701
Target:  5'- gAUGC-GGGCGUCGACgUCgCGGcggagcaUGACGg -3'
miRNA:   3'- gUACGaCCCGUAGUUG-AG-GCC-------ACUGU- -5'
15694 3' -54.3 NC_004065.1 + 37591 0.67 0.951383
Target:  5'- -cUGCggUGGGCu---GCUCCGGaUGACGg -3'
miRNA:   3'- guACG--ACCCGuaguUGAGGCC-ACUGU- -5'
15694 3' -54.3 NC_004065.1 + 225616 0.68 0.942792
Target:  5'- --cGC-GGGCGUCcagagacagagGACUCCGGcGGCGg -3'
miRNA:   3'- guaCGaCCCGUAG-----------UUGAGGCCaCUGU- -5'
15694 3' -54.3 NC_004065.1 + 121558 0.68 0.933271
Target:  5'- aGUGCgGGGCcgCuGC-CCGGUGAgCAu -3'
miRNA:   3'- gUACGaCCCGuaGuUGaGGCCACU-GU- -5'
15694 3' -54.3 NC_004065.1 + 177787 0.68 0.928156
Target:  5'- gGUGUUGGGCgcuGUUGGCgCgCGGUGGCGg -3'
miRNA:   3'- gUACGACCCG---UAGUUGaG-GCCACUGU- -5'
15694 3' -54.3 NC_004065.1 + 118462 0.68 0.922806
Target:  5'- --gGCcGGGCgGUUGGCUCuCGGUGAUAg -3'
miRNA:   3'- guaCGaCCCG-UAGUUGAG-GCCACUGU- -5'
15694 3' -54.3 NC_004065.1 + 48502 0.69 0.911398
Target:  5'- uCAU-CUGGGCGUCGAUgCCGGcGAUg -3'
miRNA:   3'- -GUAcGACCCGUAGUUGaGGCCaCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.