Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 15694 | 3' | -54.3 | NC_004065.1 | + | 124276 | 0.66 | 0.968951 |
|
Target: 5'- -cUGCUGuacagcaccaaGGCGUCGACggCGGUGAUc -3' miRNA: 3'- guACGAC-----------CCGUAGUUGagGCCACUGu -5' |
|||||||
| 15694 | 3' | -54.3 | NC_004065.1 | + | 200107 | 0.66 | 0.968951 |
|
Target: 5'- uCAUGaCgaagacGGCGUCGguccGCUCCuGGUGACAg -3' miRNA: 3'- -GUAC-Gac----CCGUAGU----UGAGG-CCACUGU- -5' |
|||||||
| 15694 | 3' | -54.3 | NC_004065.1 | + | 29457 | 0.66 | 0.971832 |
|
Target: 5'- -cUGCgaGGGCGUCAugcagcuauucACUCUGG-GACu -3' miRNA: 3'- guACGa-CCCGUAGU-----------UGAGGCCaCUGu -5' |
|||||||
| 15694 | 3' | -54.3 | NC_004065.1 | + | 207362 | 0.66 | 0.971832 |
|
Target: 5'- --aGC-GGGUGUCAcgcgGCaUCCGGUGAUg -3' miRNA: 3'- guaCGaCCCGUAGU----UG-AGGCCACUGu -5' |
|||||||
| 15694 | 3' | -54.3 | NC_004065.1 | + | 39037 | 0.66 | 0.971832 |
|
Target: 5'- -cUGC-GGGCgccagaccGUCAGC-CCGGUGugGa -3' miRNA: 3'- guACGaCCCG--------UAGUUGaGGCCACugU- -5' |
|||||||
| 15694 | 3' | -54.3 | NC_004065.1 | + | 163309 | 0.66 | 0.977007 |
|
Target: 5'- --gGCacGGGCGccagccucUUGACUCUGGUGGCGg -3' miRNA: 3'- guaCGa-CCCGU--------AGUUGAGGCCACUGU- -5' |
|||||||
| 15694 | 3' | -54.3 | NC_004065.1 | + | 125381 | 0.66 | 0.979315 |
|
Target: 5'- --gGCUGGGCGaCGGCgcgguggugCCGGcGGCGu -3' miRNA: 3'- guaCGACCCGUaGUUGa--------GGCCaCUGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home