miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15694 3' -54.3 NC_004065.1 + 148839 0.69 0.911398
Target:  5'- --cGUUGGGgAUCAGCUCucccgacuCGGUGugGa -3'
miRNA:   3'- guaCGACCCgUAGUUGAG--------GCCACugU- -5'
15694 3' -54.3 NC_004065.1 + 182434 0.69 0.905343
Target:  5'- --cGCUGGGCAgccggGGgUCCuGGUGACGu -3'
miRNA:   3'- guaCGACCCGUag---UUgAGG-CCACUGU- -5'
15694 3' -54.3 NC_004065.1 + 111165 0.7 0.878835
Target:  5'- gAUGCUcGGCGUCGAcCUCCGGguagGAg- -3'
miRNA:   3'- gUACGAcCCGUAGUU-GAGGCCa---CUgu -5'
15694 3' -54.3 NC_004065.1 + 173428 0.73 0.738414
Target:  5'- --gGCUGGGCuuaggggugacguUCGACguaCCGGUGGCGg -3'
miRNA:   3'- guaCGACCCGu------------AGUUGa--GGCCACUGU- -5'
15694 3' -54.3 NC_004065.1 + 149893 0.73 0.712907
Target:  5'- gCGUGCaGGGCcugcCGACggcgCCGGUGACGg -3'
miRNA:   3'- -GUACGaCCCGua--GUUGa---GGCCACUGU- -5'
15694 3' -54.3 NC_004065.1 + 123821 0.77 0.521875
Target:  5'- gAUGCUGGGCGUCGAC-CCGuacGACGa -3'
miRNA:   3'- gUACGACCCGUAGUUGaGGCca-CUGU- -5'
15694 3' -54.3 NC_004065.1 + 38766 1.08 0.00632
Target:  5'- uCAUGCUGGGCAUCAACUCCGGUGACAg -3'
miRNA:   3'- -GUACGACCCGUAGUUGAGGCCACUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.