Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15694 | 3' | -54.3 | NC_004065.1 | + | 163448 | 0.67 | 0.960494 |
Target: 5'- cCGUGCagucggccacuucgaUGGGUagcucgagcuccGUCGGCggcgCCGGUGGCGg -3' miRNA: 3'- -GUACG---------------ACCCG------------UAGUUGa---GGCCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 173428 | 0.73 | 0.738414 |
Target: 5'- --gGCUGGGCuuaggggugacguUCGACguaCCGGUGGCGg -3' miRNA: 3'- guaCGACCCGu------------AGUUGa--GGCCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 177787 | 0.68 | 0.928156 |
Target: 5'- gGUGUUGGGCgcuGUUGGCgCgCGGUGGCGg -3' miRNA: 3'- gUACGACCCG---UAGUUGaG-GCCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 182434 | 0.69 | 0.905343 |
Target: 5'- --cGCUGGGCAgccggGGgUCCuGGUGACGu -3' miRNA: 3'- guaCGACCCGUag---UUgAGG-CCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 200107 | 0.66 | 0.968951 |
Target: 5'- uCAUGaCgaagacGGCGUCGguccGCUCCuGGUGACAg -3' miRNA: 3'- -GUAC-Gac----CCGUAGU----UGAGG-CCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 207362 | 0.66 | 0.971832 |
Target: 5'- --aGC-GGGUGUCAcgcgGCaUCCGGUGAUg -3' miRNA: 3'- guaCGaCCCGUAGU----UG-AGGCCACUGu -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 225616 | 0.68 | 0.942792 |
Target: 5'- --cGC-GGGCGUCcagagacagagGACUCCGGcGGCGg -3' miRNA: 3'- guaCGaCCCGUAG-----------UUGAGGCCaCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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