Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15694 | 3' | -54.3 | NC_004065.1 | + | 173428 | 0.73 | 0.738414 |
Target: 5'- --gGCUGGGCuuaggggugacguUCGACguaCCGGUGGCGg -3' miRNA: 3'- guaCGACCCGu------------AGUUGa--GGCCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 163309 | 0.66 | 0.977007 |
Target: 5'- --gGCacGGGCGccagccucUUGACUCUGGUGGCGg -3' miRNA: 3'- guaCGa-CCCGU--------AGUUGAGGCCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 207362 | 0.66 | 0.971832 |
Target: 5'- --aGC-GGGUGUCAcgcgGCaUCCGGUGAUg -3' miRNA: 3'- guaCGaCCCGUAGU----UG-AGGCCACUGu -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 200107 | 0.66 | 0.968951 |
Target: 5'- uCAUGaCgaagacGGCGUCGguccGCUCCuGGUGACAg -3' miRNA: 3'- -GUAC-Gac----CCGUAGU----UGAGG-CCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 62349 | 0.66 | 0.968951 |
Target: 5'- --gGCUGGGUcgucgguuuUCGACggCGGUGGCGg -3' miRNA: 3'- guaCGACCCGu--------AGUUGagGCCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 100769 | 0.67 | 0.965867 |
Target: 5'- --aGCUgugGGGCGggcUCAGCUUcgcgCGGUGACGu -3' miRNA: 3'- guaCGA---CCCGU---AGUUGAG----GCCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 63616 | 0.67 | 0.962573 |
Target: 5'- gGUGCUGGGCAucUCGAUcCCcGUGuCGa -3' miRNA: 3'- gUACGACCCGU--AGUUGaGGcCACuGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 163448 | 0.67 | 0.960494 |
Target: 5'- cCGUGCagucggccacuucgaUGGGUagcucgagcuccGUCGGCggcgCCGGUGGCGg -3' miRNA: 3'- -GUACG---------------ACCCG------------UAGUUGa---GGCCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 67080 | 0.67 | 0.959064 |
Target: 5'- -cUGaUGGGCAUCGA-UCCGGUgcugGACAc -3' miRNA: 3'- guACgACCCGUAGUUgAGGCCA----CUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 32955 | 0.67 | 0.958701 |
Target: 5'- gAUGC-GGGCGUCGACgUCgCGGcggagcaUGACGg -3' miRNA: 3'- gUACGaCCCGUAGUUG-AG-GCC-------ACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 118462 | 0.68 | 0.922806 |
Target: 5'- --gGCcGGGCgGUUGGCUCuCGGUGAUAg -3' miRNA: 3'- guaCGaCCCG-UAGUUGAG-GCCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 48502 | 0.69 | 0.911398 |
Target: 5'- uCAU-CUGGGCGUCGAUgCCGGcGAUg -3' miRNA: 3'- -GUAcGACCCGUAGUUGaGGCCaCUGu -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 148839 | 0.69 | 0.911398 |
Target: 5'- --cGUUGGGgAUCAGCUCucccgacuCGGUGugGa -3' miRNA: 3'- guaCGACCCgUAGUUGAG--------GCCACugU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 182434 | 0.69 | 0.905343 |
Target: 5'- --cGCUGGGCAgccggGGgUCCuGGUGACGu -3' miRNA: 3'- guaCGACCCGUag---UUgAGG-CCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 121558 | 0.68 | 0.933271 |
Target: 5'- aGUGCgGGGCcgCuGC-CCGGUGAgCAu -3' miRNA: 3'- gUACGaCCCGuaGuUGaGGCCACU-GU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 177787 | 0.68 | 0.928156 |
Target: 5'- gGUGUUGGGCgcuGUUGGCgCgCGGUGGCGg -3' miRNA: 3'- gUACGACCCG---UAGUUGaG-GCCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 111165 | 0.7 | 0.878835 |
Target: 5'- gAUGCUcGGCGUCGAcCUCCGGguagGAg- -3' miRNA: 3'- gUACGAcCCGUAGUU-GAGGCCa---CUgu -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 149893 | 0.73 | 0.712907 |
Target: 5'- gCGUGCaGGGCcugcCGACggcgCCGGUGACGg -3' miRNA: 3'- -GUACGaCCCGua--GUUGa---GGCCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 123821 | 0.77 | 0.521875 |
Target: 5'- gAUGCUGGGCGUCGAC-CCGuacGACGa -3' miRNA: 3'- gUACGACCCGUAGUUGaGGCca-CUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 125381 | 0.66 | 0.979315 |
Target: 5'- --gGCUGGGCGaCGGCgcgguggugCCGGcGGCGu -3' miRNA: 3'- guaCGACCCGUaGUUGa--------GGCCaCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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