Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15694 | 3' | -54.3 | NC_004065.1 | + | 121558 | 0.68 | 0.933271 |
Target: 5'- aGUGCgGGGCcgCuGC-CCGGUGAgCAu -3' miRNA: 3'- gUACGaCCCGuaGuUGaGGCCACU-GU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 177787 | 0.68 | 0.928156 |
Target: 5'- gGUGUUGGGCgcuGUUGGCgCgCGGUGGCGg -3' miRNA: 3'- gUACGACCCG---UAGUUGaG-GCCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 111165 | 0.7 | 0.878835 |
Target: 5'- gAUGCUcGGCGUCGAcCUCCGGguagGAg- -3' miRNA: 3'- gUACGAcCCGUAGUU-GAGGCCa---CUgu -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 149893 | 0.73 | 0.712907 |
Target: 5'- gCGUGCaGGGCcugcCGACggcgCCGGUGACGg -3' miRNA: 3'- -GUACGaCCCGua--GUUGa---GGCCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 123821 | 0.77 | 0.521875 |
Target: 5'- gAUGCUGGGCGUCGAC-CCGuacGACGa -3' miRNA: 3'- gUACGACCCGUAGUUGaGGCca-CUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 38766 | 1.08 | 0.00632 |
Target: 5'- uCAUGCUGGGCAUCAACUCCGGUGACAg -3' miRNA: 3'- -GUACGACCCGUAGUUGAGGCCACUGU- -5' |
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15694 | 3' | -54.3 | NC_004065.1 | + | 125381 | 0.66 | 0.979315 |
Target: 5'- --gGCUGGGCGaCGGCgcgguggugCCGGcGGCGu -3' miRNA: 3'- guaCGACCCGUaGUUGa--------GGCCaCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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