miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15694 5' -57 NC_004065.1 + 191089 0.65 0.92581
Target:  5'- -gCGUGGUuauuucucgcgcacGGUGUCGCgucGCagauCACCACu -3'
miRNA:   3'- aaGCAUCA--------------CCACAGCGa--CGg---GUGGUG- -5'
15694 5' -57 NC_004065.1 + 32432 0.66 0.913075
Target:  5'- -aCGUAcucgaaGGUGUCGUaguagcgcagccgcaUGCCCACCAg -3'
miRNA:   3'- aaGCAUca----CCACAGCG---------------ACGGGUGGUg -5'
15694 5' -57 NC_004065.1 + 128542 0.67 0.892043
Target:  5'- -aCGgagAGUGGUGUgGCUgugucugcGCCCGCaGCg -3'
miRNA:   3'- aaGCa--UCACCACAgCGA--------CGGGUGgUG- -5'
15694 5' -57 NC_004065.1 + 144668 0.67 0.885369
Target:  5'- cUCGUAGUGG-GUCaCgaGCgUCACCACg -3'
miRNA:   3'- aAGCAUCACCaCAGcGa-CG-GGUGGUG- -5'
15694 5' -57 NC_004065.1 + 73128 0.67 0.878478
Target:  5'- -gCGUAGuUGGUGUUGgaGUCguaCACCACc -3'
miRNA:   3'- aaGCAUC-ACCACAGCgaCGG---GUGGUG- -5'
15694 5' -57 NC_004065.1 + 188894 0.67 0.878478
Target:  5'- cUgGUcGUGGUGUgGUacgUGCUCGCCGCc -3'
miRNA:   3'- aAgCAuCACCACAgCG---ACGGGUGGUG- -5'
15694 5' -57 NC_004065.1 + 141609 0.68 0.848848
Target:  5'- -aCGaGGUGGcgaacuuuUGcUCGCUGCUCAUCACg -3'
miRNA:   3'- aaGCaUCACC--------AC-AGCGACGGGUGGUG- -5'
15694 5' -57 NC_004065.1 + 147940 0.68 0.816194
Target:  5'- ----cGGUGGUGUCGCUGaCgAUCGCg -3'
miRNA:   3'- aagcaUCACCACAGCGACgGgUGGUG- -5'
15694 5' -57 NC_004065.1 + 125107 0.68 0.807608
Target:  5'- --gGUAGUGcGUGUaCGCcgccgGCaCCACCGCg -3'
miRNA:   3'- aagCAUCAC-CACA-GCGa----CG-GGUGGUG- -5'
15694 5' -57 NC_004065.1 + 23618 0.69 0.789986
Target:  5'- -cCGgagaggGGUGGUGUCGCUuGaCCCGCUg- -3'
miRNA:   3'- aaGCa-----UCACCACAGCGA-C-GGGUGGug -5'
15694 5' -57 NC_004065.1 + 18098 0.69 0.766266
Target:  5'- cUCGUGGccGGcaucucUGUCGCggaagaaccuccggGCCCGCCGCg -3'
miRNA:   3'- aAGCAUCa-CC------ACAGCGa-------------CGGGUGGUG- -5'
15694 5' -57 NC_004065.1 + 174856 0.7 0.753163
Target:  5'- gUCGUGGUGGUGgcgUGCUuccuaGCgggggucgCCGCCGCg -3'
miRNA:   3'- aAGCAUCACCACa--GCGA-----CG--------GGUGGUG- -5'
15694 5' -57 NC_004065.1 + 203308 0.71 0.659136
Target:  5'- --gGUGGUGGUG-CGCUGCCuCaaacgucaaaacaacACCACg -3'
miRNA:   3'- aagCAUCACCACaGCGACGG-G---------------UGGUG- -5'
15694 5' -57 NC_004065.1 + 138715 0.71 0.655126
Target:  5'- cUUCGUAGUuGuUGUUGCUGCUCGCC-Cg -3'
miRNA:   3'- -AAGCAUCAcC-ACAGCGACGGGUGGuG- -5'
15694 5' -57 NC_004065.1 + 38729 1.06 0.004752
Target:  5'- gUUCGUAGUGGUGUCGCUGCCCACCACc -3'
miRNA:   3'- -AAGCAUCACCACAGCGACGGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.