miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15695 3' -60.2 NC_004065.1 + 60075 0.66 0.871828
Target:  5'- gCCCCaUCGc-CUGCacgaggaGGAUCUCUCCu -3'
miRNA:   3'- gGGGG-GGCuaGACGg------CCUAGAGAGGc -5'
15695 3' -60.2 NC_004065.1 + 59518 0.66 0.864908
Target:  5'- uCCCCUUCGAggagaUCcgcggUGCaGGGUCUCUCUGc -3'
miRNA:   3'- -GGGGGGGCU-----AG-----ACGgCCUAGAGAGGC- -5'
15695 3' -60.2 NC_004065.1 + 202351 0.66 0.864908
Target:  5'- -gCCUCCGGccUCcagGCCGGA--UCUCCGg -3'
miRNA:   3'- ggGGGGGCU--AGa--CGGCCUagAGAGGC- -5'
15695 3' -60.2 NC_004065.1 + 91046 0.66 0.857806
Target:  5'- aCCCaCgCCGAUCUGCUGGAcaacCUgCGg -3'
miRNA:   3'- -GGG-GgGGCUAGACGGCCUaga-GAgGC- -5'
15695 3' -60.2 NC_004065.1 + 177401 0.66 0.850526
Target:  5'- gCUCCUCCGAUCgagGCCaguuccuccccaGGAUCaUCUUCu -3'
miRNA:   3'- -GGGGGGGCUAGa--CGG------------CCUAG-AGAGGc -5'
15695 3' -60.2 NC_004065.1 + 114744 0.66 0.849789
Target:  5'- gCCCUCCCGAUUcggacgacgacgaUGCgaugacgacgaGGAUCUCgaagCCGg -3'
miRNA:   3'- -GGGGGGGCUAG-------------ACGg----------CCUAGAGa---GGC- -5'
15695 3' -60.2 NC_004065.1 + 135314 0.66 0.843075
Target:  5'- gCCCgCUCCGcggCUGCCGcguacgccuGAcCUCUCCGa -3'
miRNA:   3'- -GGG-GGGGCua-GACGGC---------CUaGAGAGGC- -5'
15695 3' -60.2 NC_004065.1 + 57246 0.66 0.843075
Target:  5'- aCCCCCUCGAagacGCCGG-UCUCUagcuaaCGg -3'
miRNA:   3'- -GGGGGGGCUaga-CGGCCuAGAGAg-----GC- -5'
15695 3' -60.2 NC_004065.1 + 197777 0.66 0.835457
Target:  5'- uCCCCUucuaCCGcgCgcgGCCGGGUCcCUCgGa -3'
miRNA:   3'- -GGGGG----GGCuaGa--CGGCCUAGaGAGgC- -5'
15695 3' -60.2 NC_004065.1 + 52981 0.67 0.819746
Target:  5'- uCUCCCaCCGugcaagugGUCUGCaCGGAUCUggaUCCa -3'
miRNA:   3'- -GGGGG-GGC--------UAGACG-GCCUAGAg--AGGc -5'
15695 3' -60.2 NC_004065.1 + 109959 0.67 0.811665
Target:  5'- gCCCCCCGAgggUC-GCCGcgcGAUCUCggCGg -3'
miRNA:   3'- gGGGGGGCU---AGaCGGC---CUAGAGagGC- -5'
15695 3' -60.2 NC_004065.1 + 24764 0.67 0.802612
Target:  5'- gCCCCCCGuug-GCCGGcgcggguAUCUCgcgCCa -3'
miRNA:   3'- gGGGGGGCuagaCGGCC-------UAGAGa--GGc -5'
15695 3' -60.2 NC_004065.1 + 63290 0.67 0.795085
Target:  5'- gUCgCCUCGcgC-GCCGGAcagCUCUCCGu -3'
miRNA:   3'- -GGgGGGGCuaGaCGGCCUa--GAGAGGC- -5'
15695 3' -60.2 NC_004065.1 + 223755 0.67 0.7866
Target:  5'- aUCCCCUgaccggCGAUCUGCUGGucccgagacgGUCUCgggaCCGg -3'
miRNA:   3'- -GGGGGG------GCUAGACGGCC----------UAGAGa---GGC- -5'
15695 3' -60.2 NC_004065.1 + 93841 0.68 0.751526
Target:  5'- cCCUCCCCGAgCUcCCGGuccCUgUCCGg -3'
miRNA:   3'- -GGGGGGGCUaGAcGGCCua-GAgAGGC- -5'
15695 3' -60.2 NC_004065.1 + 93809 0.68 0.751526
Target:  5'- cCUCCCCCGAgCUcCCGGuccCUgUCCGg -3'
miRNA:   3'- -GGGGGGGCUaGAcGGCCua-GAgAGGC- -5'
15695 3' -60.2 NC_004065.1 + 93873 0.68 0.751526
Target:  5'- cCCUCCCCGAgCUcCCGGuccCUgUCCGg -3'
miRNA:   3'- -GGGGGGGCUaGAcGGCCua-GAgAGGC- -5'
15695 3' -60.2 NC_004065.1 + 197274 0.68 0.751526
Target:  5'- aCCCCUgaCGGUCgucgGUCGGAUCgUCaUCCGc -3'
miRNA:   3'- gGGGGG--GCUAGa---CGGCCUAG-AG-AGGC- -5'
15695 3' -60.2 NC_004065.1 + 116044 0.68 0.742511
Target:  5'- gCCCCaCGAUCUGauaCGGAUC-CgggCCGg -3'
miRNA:   3'- gGGGGgGCUAGACg--GCCUAGaGa--GGC- -5'
15695 3' -60.2 NC_004065.1 + 113998 0.68 0.742511
Target:  5'- gUCCCUCGGcCUccucGCCGGAgUUCUCCGa -3'
miRNA:   3'- gGGGGGGCUaGA----CGGCCUaGAGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.