Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15695 | 3' | -60.2 | NC_004065.1 | + | 27822 | 0.69 | 0.696326 |
Target: 5'- gCCCUCCGAUgUGCCugcGGGUgCUCggCCGc -3' miRNA: 3'- gGGGGGGCUAgACGG---CCUA-GAGa-GGC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 202351 | 0.66 | 0.864908 |
Target: 5'- -gCCUCCGGccUCcagGCCGGA--UCUCCGg -3' miRNA: 3'- ggGGGGGCU--AGa--CGGCCUagAGAGGC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 114744 | 0.66 | 0.849789 |
Target: 5'- gCCCUCCCGAUUcggacgacgacgaUGCgaugacgacgaGGAUCUCgaagCCGg -3' miRNA: 3'- -GGGGGGGCUAG-------------ACGg----------CCUAGAGa---GGC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 57246 | 0.66 | 0.843075 |
Target: 5'- aCCCCCUCGAagacGCCGG-UCUCUagcuaaCGg -3' miRNA: 3'- -GGGGGGGCUaga-CGGCCuAGAGAg-----GC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 24764 | 0.67 | 0.802612 |
Target: 5'- gCCCCCCGuug-GCCGGcgcggguAUCUCgcgCCa -3' miRNA: 3'- gGGGGGGCuagaCGGCC-------UAGAGa--GGc -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 93873 | 0.68 | 0.751526 |
Target: 5'- cCCUCCCCGAgCUcCCGGuccCUgUCCGg -3' miRNA: 3'- -GGGGGGGCUaGAcGGCCua-GAgAGGC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 93841 | 0.68 | 0.751526 |
Target: 5'- cCCUCCCCGAgCUcCCGGuccCUgUCCGg -3' miRNA: 3'- -GGGGGGGCUaGAcGGCCua-GAgAGGC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 93809 | 0.68 | 0.751526 |
Target: 5'- cCUCCCCCGAgCUcCCGGuccCUgUCCGg -3' miRNA: 3'- -GGGGGGGCUaGAcGGCCua-GAgAGGC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 40367 | 0.68 | 0.742511 |
Target: 5'- uCCCUCCCGAcucgucgucaugUCcuCCGGGUC-CUCCGc -3' miRNA: 3'- -GGGGGGGCU------------AGacGGCCUAGaGAGGC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 223755 | 0.67 | 0.7866 |
Target: 5'- aUCCCCUgaccggCGAUCUGCUGGucccgagacgGUCUCgggaCCGg -3' miRNA: 3'- -GGGGGG------GCUAGACGGCC----------UAGAGa---GGC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 197274 | 0.68 | 0.751526 |
Target: 5'- aCCCCUgaCGGUCgucgGUCGGAUCgUCaUCCGc -3' miRNA: 3'- gGGGGG--GCUAGa---CGGCCUAG-AG-AGGC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 113998 | 0.68 | 0.742511 |
Target: 5'- gUCCCUCGGcCUccucGCCGGAgUUCUCCGa -3' miRNA: 3'- gGGGGGGCUaGA----CGGCCUaGAGAGGC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 116044 | 0.68 | 0.742511 |
Target: 5'- gCCCCaCGAUCUGauaCGGAUC-CgggCCGg -3' miRNA: 3'- gGGGGgGCUAGACg--GCCUAGaGa--GGC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 224173 | 0.69 | 0.724236 |
Target: 5'- cUCCUCCUGggCUGCCGcuGGUCUCggCCu -3' miRNA: 3'- -GGGGGGGCuaGACGGC--CUAGAGa-GGc -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 113126 | 0.69 | 0.68692 |
Target: 5'- gCCUggCCCUGAgUCUGCCGGAcgagcugCUgUCCGa -3' miRNA: 3'- -GGG--GGGGCU-AGACGGCCUa------GAgAGGC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 82055 | 0.7 | 0.648971 |
Target: 5'- uCCCCUCCGAguacgagaugUUGCgGGGUUUCUUCa -3' miRNA: 3'- -GGGGGGGCUa---------GACGgCCUAGAGAGGc -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 57844 | 0.7 | 0.6299 |
Target: 5'- aCCCCCCUcAggUGCCGGAUC-C-CCGa -3' miRNA: 3'- -GGGGGGGcUagACGGCCUAGaGaGGC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 164070 | 0.72 | 0.554152 |
Target: 5'- uCCCCCCCG--CUGCgUGGAgaacCUUUCCGa -3' miRNA: 3'- -GGGGGGGCuaGACG-GCCUa---GAGAGGC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 56177 | 0.72 | 0.554152 |
Target: 5'- gCUUCUCCGAcuUCUGCCGGcgCggaCUCCGu -3' miRNA: 3'- -GGGGGGGCU--AGACGGCCuaGa--GAGGC- -5' |
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15695 | 3' | -60.2 | NC_004065.1 | + | 60075 | 0.66 | 0.871828 |
Target: 5'- gCCCCaUCGc-CUGCacgaggaGGAUCUCUCCu -3' miRNA: 3'- gGGGG-GGCuaGACGg------CCUAGAGAGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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