miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15695 5' -52.9 NC_004065.1 + 118826 0.65 0.99173
Target:  5'- cGACGAGGACGa-CGGGACAGaaaacccaaacgGGAUGg -3'
miRNA:   3'- -CUGCUUCUGCagGUCCUGUCg-----------UCUAU- -5'
15695 5' -52.9 NC_004065.1 + 25689 0.65 0.991506
Target:  5'- cGGCGAGGuaguagauggcguCGUCCGGGggcccgcgauaACAGUAGAa- -3'
miRNA:   3'- -CUGCUUCu------------GCAGGUCC-----------UGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 90418 0.66 0.990806
Target:  5'- cGGCGGAGGCGgcggagCC-GG-CGGCAGGa- -3'
miRNA:   3'- -CUGCUUCUGCa-----GGuCCuGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 56020 0.66 0.990806
Target:  5'- uGACGAGGAUGaCCGGGuacuCGGCcucGGAg- -3'
miRNA:   3'- -CUGCUUCUGCaGGUCCu---GUCG---UCUau -5'
15695 5' -52.9 NC_004065.1 + 100355 0.66 0.990806
Target:  5'- -cCG-AGACGUaCUcGGACGGCAGGUu -3'
miRNA:   3'- cuGCuUCUGCA-GGuCCUGUCGUCUAu -5'
15695 5' -52.9 NC_004065.1 + 80024 0.66 0.989537
Target:  5'- aGACGucggauGACGgCCAGGugAgGCAGGUu -3'
miRNA:   3'- -CUGCuu----CUGCaGGUCCugU-CGUCUAu -5'
15695 5' -52.9 NC_004065.1 + 96869 0.66 0.989403
Target:  5'- cGACGAGGACGaaggggucagaucUCCcgGGGAguGCAGc-- -3'
miRNA:   3'- -CUGCUUCUGC-------------AGG--UCCUguCGUCuau -5'
15695 5' -52.9 NC_004065.1 + 91649 0.66 0.988137
Target:  5'- gGACGuAGACGUCCucuGcGACgAGCuAGGUAu -3'
miRNA:   3'- -CUGCuUCUGCAGGu--C-CUG-UCG-UCUAU- -5'
15695 5' -52.9 NC_004065.1 + 122595 0.66 0.988137
Target:  5'- cAUGGGcACGaUCCAGGGCAGCAcGAg- -3'
miRNA:   3'- cUGCUUcUGC-AGGUCCUGUCGU-CUau -5'
15695 5' -52.9 NC_004065.1 + 225617 0.66 0.986595
Target:  5'- -cCGcGGGCGUCCAGaGACAGaGGAc- -3'
miRNA:   3'- cuGCuUCUGCAGGUC-CUGUCgUCUau -5'
15695 5' -52.9 NC_004065.1 + 55405 0.66 0.986104
Target:  5'- gGACaGAAGACcggccugaugggcuGUCCGGGGC-GCGGGUc -3'
miRNA:   3'- -CUG-CUUCUG--------------CAGGUCCUGuCGUCUAu -5'
15695 5' -52.9 NC_004065.1 + 149672 0.66 0.984904
Target:  5'- cGCGuuGACcguGUCCAGGGuCuGCAGGUGa -3'
miRNA:   3'- cUGCuuCUG---CAGGUCCU-GuCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 97229 0.67 0.983055
Target:  5'- cGCGAcGGACGgCCGGcGCAGCAGGc- -3'
miRNA:   3'- cUGCU-UCUGCaGGUCcUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 227892 0.67 0.983055
Target:  5'- gGACGAGGAuCGcUCCgAGGAUAGCGu--- -3'
miRNA:   3'- -CUGCUUCU-GC-AGG-UCCUGUCGUcuau -5'
15695 5' -52.9 NC_004065.1 + 124295 0.67 0.983055
Target:  5'- --gGAAGuCGUUCAGGAaCAcGCGGAUGu -3'
miRNA:   3'- cugCUUCuGCAGGUCCU-GU-CGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 78284 0.67 0.982468
Target:  5'- aGACGAAGACGcaacucagcgacuuUCUgcGGGACuucucGCAGGUGc -3'
miRNA:   3'- -CUGCUUCUGC--------------AGG--UCCUGu----CGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 98805 0.67 0.98104
Target:  5'- cGACGAGGACGaugCCGcgacGGGCGGCGu--- -3'
miRNA:   3'- -CUGCUUCUGCa--GGU----CCUGUCGUcuau -5'
15695 5' -52.9 NC_004065.1 + 72597 0.67 0.98104
Target:  5'- cACGAAgGAUGUCCcuGGGCAGCAc--- -3'
miRNA:   3'- cUGCUU-CUGCAGGu-CCUGUCGUcuau -5'
15695 5' -52.9 NC_004065.1 + 122633 0.67 0.980402
Target:  5'- aGACGGAGACGaggcccgucaccucUCCcgagaagacGGGCGGCAGGg- -3'
miRNA:   3'- -CUGCUUCUGC--------------AGGu--------CCUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 8665 0.67 0.978622
Target:  5'- cACGGAGACGUUCggcguacaaaucgAGGAUAGCcGAUc -3'
miRNA:   3'- cUGCUUCUGCAGG-------------UCCUGUCGuCUAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.