miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15695 5' -52.9 NC_004065.1 + 145457 0.67 0.97648
Target:  5'- aGGCGAuGGCGUCgGGGGCuGCcGGUc -3'
miRNA:   3'- -CUGCUuCUGCAGgUCCUGuCGuCUAu -5'
15695 5' -52.9 NC_004065.1 + 166143 0.67 0.97648
Target:  5'- aGACGucGGCG-CCGGcGGCAGCGGc-- -3'
miRNA:   3'- -CUGCuuCUGCaGGUC-CUGUCGUCuau -5'
15695 5' -52.9 NC_004065.1 + 74130 0.67 0.97648
Target:  5'- cACGAGGACGUCgAGG-CGGguGc-- -3'
miRNA:   3'- cUGCUUCUGCAGgUCCuGUCguCuau -5'
15695 5' -52.9 NC_004065.1 + 208888 0.67 0.97392
Target:  5'- cGCGguGACGgacugaguucUCCGGGcGCAGCAGAa- -3'
miRNA:   3'- cUGCuuCUGC----------AGGUCC-UGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 163644 0.68 0.968204
Target:  5'- cGGCGgcGGCGg-CAGcGGCAGCGGAg- -3'
miRNA:   3'- -CUGCuuCUGCagGUC-CUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 29733 0.68 0.968204
Target:  5'- gGACGAuGAgaUCCuccGGACAGCAGAg- -3'
miRNA:   3'- -CUGCUuCUgcAGGu--CCUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 149731 0.68 0.968204
Target:  5'- uGACGAaccaGGGCGcCgAGGACAGCAu--- -3'
miRNA:   3'- -CUGCU----UCUGCaGgUCCUGUCGUcuau -5'
15695 5' -52.9 NC_004065.1 + 32925 0.68 0.965035
Target:  5'- cGACGAAGACGgCCGGucGGCucccgcGCGGAUGc -3'
miRNA:   3'- -CUGCUUCUGCaGGUC--CUGu-----CGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 18908 0.68 0.96165
Target:  5'- uGGCGAAGAUG-CUacaAGaGACGGCAGAg- -3'
miRNA:   3'- -CUGCUUCUGCaGG---UC-CUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 222270 0.68 0.96165
Target:  5'- cGACGGccuGACGUCCGaGACcaGGUAGAUGu -3'
miRNA:   3'- -CUGCUu--CUGCAGGUcCUG--UCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 102601 0.68 0.96165
Target:  5'- cGACGAAgcGACGUCUGGGACGGgAc--- -3'
miRNA:   3'- -CUGCUU--CUGCAGGUCCUGUCgUcuau -5'
15695 5' -52.9 NC_004065.1 + 197829 0.68 0.96165
Target:  5'- -uUGggGuCGUCCAGGucccagggGCGGCAGGa- -3'
miRNA:   3'- cuGCuuCuGCAGGUCC--------UGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 185490 0.68 0.954214
Target:  5'- aGAUGAGGACa-CCGGGACAGguGc-- -3'
miRNA:   3'- -CUGCUUCUGcaGGUCCUGUCguCuau -5'
15695 5' -52.9 NC_004065.1 + 81661 0.69 0.941331
Target:  5'- gGACGAgGGACGggcCCGGGugGGCAaGUAc -3'
miRNA:   3'- -CUGCU-UCUGCa--GGUCCugUCGUcUAU- -5'
15695 5' -52.9 NC_004065.1 + 19263 0.69 0.940865
Target:  5'- -uCGGAGuCGUcgaucaguuugcgCCGGGACAGCAGGg- -3'
miRNA:   3'- cuGCUUCuGCA-------------GGUCCUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 141826 0.69 0.936563
Target:  5'- -uCGGAGACGg--AGGACGGUAGGUAc -3'
miRNA:   3'- cuGCUUCUGCaggUCCUGUCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 121638 0.69 0.936563
Target:  5'- cACGggGACGUgUAGcucCAGCAGGUAa -3'
miRNA:   3'- cUGCuuCUGCAgGUCcu-GUCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 118305 0.7 0.926306
Target:  5'- gGACGAAGACGUgUAcGACgAGCAGGg- -3'
miRNA:   3'- -CUGCUUCUGCAgGUcCUG-UCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 165833 0.7 0.920816
Target:  5'- -uUGAAGAcCGUCacuaGGGACGGCGGGg- -3'
miRNA:   3'- cuGCUUCU-GCAGg---UCCUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 128451 0.7 0.909115
Target:  5'- cGGCGGAGGCGUCCGcGGGCGcgauCAGGc- -3'
miRNA:   3'- -CUGCUUCUGCAGGU-CCUGUc---GUCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.