miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15695 5' -52.9 NC_004065.1 + 7133 0.71 0.882882
Target:  5'- cGACGAcgAGACGaCCGGGucuauggaACGGCAGAa- -3'
miRNA:   3'- -CUGCU--UCUGCaGGUCC--------UGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 8665 0.67 0.978622
Target:  5'- cACGGAGACGUUCggcguacaaaucgAGGAUAGCcGAUc -3'
miRNA:   3'- cUGCUUCUGCAGG-------------UCCUGUCGuCUAu -5'
15695 5' -52.9 NC_004065.1 + 16866 0.81 0.394449
Target:  5'- cGGCGAGGGCGagCCAGaACAGCAGAUAg -3'
miRNA:   3'- -CUGCUUCUGCa-GGUCcUGUCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 18908 0.68 0.96165
Target:  5'- uGGCGAAGAUG-CUacaAGaGACGGCAGAg- -3'
miRNA:   3'- -CUGCUUCUGCaGG---UC-CUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 19263 0.69 0.940865
Target:  5'- -uCGGAGuCGUcgaucaguuugcgCCGGGACAGCAGGg- -3'
miRNA:   3'- cuGCUUCuGCA-------------GGUCCUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 19754 0.72 0.845099
Target:  5'- aGACGggGGCGUgCGGGGguGUGGGc- -3'
miRNA:   3'- -CUGCuuCUGCAgGUCCUguCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 25689 0.65 0.991506
Target:  5'- cGGCGAGGuaguagauggcguCGUCCGGGggcccgcgauaACAGUAGAa- -3'
miRNA:   3'- -CUGCUUCu------------GCAGGUCC-----------UGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 29733 0.68 0.968204
Target:  5'- gGACGAuGAgaUCCuccGGACAGCAGAg- -3'
miRNA:   3'- -CUGCUuCUgcAGGu--CCUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 32925 0.68 0.965035
Target:  5'- cGACGAAGACGgCCGGucGGCucccgcGCGGAUGc -3'
miRNA:   3'- -CUGCUUCUGCaGGUC--CUGu-----CGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 39107 0.71 0.889787
Target:  5'- uGGCGAuGGGCGUCCc--GCGGCAGAUGu -3'
miRNA:   3'- -CUGCU-UCUGCAGGuccUGUCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 39803 1.06 0.011476
Target:  5'- gGACGAAGACGUCCAGGACAGCAGAUAc -3'
miRNA:   3'- -CUGCUUCUGCAGGUCCUGUCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 53795 0.76 0.645549
Target:  5'- aGGCGGAGGCa-CCGGGACGGUGGGUGu -3'
miRNA:   3'- -CUGCUUCUGcaGGUCCUGUCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 55405 0.66 0.986104
Target:  5'- gGACaGAAGACcggccugaugggcuGUCCGGGGC-GCGGGUc -3'
miRNA:   3'- -CUG-CUUCUG--------------CAGGUCCUGuCGUCUAu -5'
15695 5' -52.9 NC_004065.1 + 56020 0.66 0.990806
Target:  5'- uGACGAGGAUGaCCGGGuacuCGGCcucGGAg- -3'
miRNA:   3'- -CUGCUUCUGCaGGUCCu---GUCG---UCUau -5'
15695 5' -52.9 NC_004065.1 + 60561 0.74 0.735521
Target:  5'- cGACGGAGACG-CCGGGuccgcacACGGCGGGg- -3'
miRNA:   3'- -CUGCUUCUGCaGGUCC-------UGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 71452 0.74 0.755945
Target:  5'- cGGCGAGGACGauaagCCAGGGCAGgAGc-- -3'
miRNA:   3'- -CUGCUUCUGCa----GGUCCUGUCgUCuau -5'
15695 5' -52.9 NC_004065.1 + 72597 0.67 0.98104
Target:  5'- cACGAAgGAUGUCCcuGGGCAGCAc--- -3'
miRNA:   3'- cUGCUU-CUGCAGGu-CCUGUCGUcuau -5'
15695 5' -52.9 NC_004065.1 + 74130 0.67 0.97648
Target:  5'- cACGAGGACGUCgAGG-CGGguGc-- -3'
miRNA:   3'- cUGCUUCUGCAGgUCCuGUCguCuau -5'
15695 5' -52.9 NC_004065.1 + 78284 0.67 0.982468
Target:  5'- aGACGAAGACGcaacucagcgacuuUCUgcGGGACuucucGCAGGUGc -3'
miRNA:   3'- -CUGCUUCUGC--------------AGG--UCCUGu----CGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 80024 0.66 0.989537
Target:  5'- aGACGucggauGACGgCCAGGugAgGCAGGUu -3'
miRNA:   3'- -CUGCuu----CUGCaGGUCCugU-CGUCUAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.