miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15695 5' -52.9 NC_004065.1 + 121638 0.69 0.936563
Target:  5'- cACGggGACGUgUAGcucCAGCAGGUAa -3'
miRNA:   3'- cUGCuuCUGCAgGUCcu-GUCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 119529 0.7 0.902906
Target:  5'- cGCGggGACGUggucgagggCCAGGGCGaacacGCAGAa- -3'
miRNA:   3'- cUGCuuCUGCA---------GGUCCUGU-----CGUCUau -5'
15695 5' -52.9 NC_004065.1 + 118826 0.65 0.99173
Target:  5'- cGACGAGGACGa-CGGGACAGaaaacccaaacgGGAUGg -3'
miRNA:   3'- -CUGCUUCUGCagGUCCUGUCg-----------UCUAU- -5'
15695 5' -52.9 NC_004065.1 + 118305 0.7 0.926306
Target:  5'- gGACGAAGACGUgUAcGACgAGCAGGg- -3'
miRNA:   3'- -CUGCUUCUGCAgGUcCUG-UCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 109123 0.74 0.765505
Target:  5'- gGACGGAGGUGgCgGGGACGGCGGGUGa -3'
miRNA:   3'- -CUGCUUCUGCaGgUCCUGUCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 108275 0.71 0.868405
Target:  5'- cAUGggGACGUCCGcGGACA-CGGAUu -3'
miRNA:   3'- cUGCuuCUGCAGGU-CCUGUcGUCUAu -5'
15695 5' -52.9 NC_004065.1 + 102601 0.68 0.96165
Target:  5'- cGACGAAgcGACGUCUGGGACGGgAc--- -3'
miRNA:   3'- -CUGCUU--CUGCAGGUCCUGUCgUcuau -5'
15695 5' -52.9 NC_004065.1 + 101849 0.72 0.836931
Target:  5'- cGCGggGGCGUCgGGGGCGcuaucgccgccGCAGAc- -3'
miRNA:   3'- cUGCuuCUGCAGgUCCUGU-----------CGUCUau -5'
15695 5' -52.9 NC_004065.1 + 100355 0.66 0.990806
Target:  5'- -cCG-AGACGUaCUcGGACGGCAGGUu -3'
miRNA:   3'- cuGCuUCUGCA-GGuCCUGUCGUCUAu -5'
15695 5' -52.9 NC_004065.1 + 98805 0.67 0.98104
Target:  5'- cGACGAGGACGaugCCGcgacGGGCGGCGu--- -3'
miRNA:   3'- -CUGCUUCUGCa--GGU----CCUGUCGUcuau -5'
15695 5' -52.9 NC_004065.1 + 97229 0.67 0.983055
Target:  5'- cGCGAcGGACGgCCGGcGCAGCAGGc- -3'
miRNA:   3'- cUGCU-UCUGCaGGUCcUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 96869 0.66 0.989403
Target:  5'- cGACGAGGACGaaggggucagaucUCCcgGGGAguGCAGc-- -3'
miRNA:   3'- -CUGCUUCUGC-------------AGG--UCCUguCGUCuau -5'
15695 5' -52.9 NC_004065.1 + 96748 0.74 0.746274
Target:  5'- gGGCGAGGGCGagCAGGGCgacGGCGGAg- -3'
miRNA:   3'- -CUGCUUCUGCagGUCCUG---UCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 91649 0.66 0.988137
Target:  5'- gGACGuAGACGUCCucuGcGACgAGCuAGGUAu -3'
miRNA:   3'- -CUGCuUCUGCAGGu--C-CUG-UCG-UCUAU- -5'
15695 5' -52.9 NC_004065.1 + 90418 0.66 0.990806
Target:  5'- cGGCGGAGGCGgcggagCC-GG-CGGCAGGa- -3'
miRNA:   3'- -CUGCUUCUGCa-----GGuCCuGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 81661 0.69 0.941331
Target:  5'- gGACGAgGGACGggcCCGGGugGGCAaGUAc -3'
miRNA:   3'- -CUGCU-UCUGCa--GGUCCugUCGUcUAU- -5'
15695 5' -52.9 NC_004065.1 + 80024 0.66 0.989537
Target:  5'- aGACGucggauGACGgCCAGGugAgGCAGGUu -3'
miRNA:   3'- -CUGCuu----CUGCaGGUCCugU-CGUCUAu -5'
15695 5' -52.9 NC_004065.1 + 78284 0.67 0.982468
Target:  5'- aGACGAAGACGcaacucagcgacuuUCUgcGGGACuucucGCAGGUGc -3'
miRNA:   3'- -CUGCUUCUGC--------------AGG--UCCUGu----CGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 74130 0.67 0.97648
Target:  5'- cACGAGGACGUCgAGG-CGGguGc-- -3'
miRNA:   3'- cUGCUUCUGCAGgUCCuGUCguCuau -5'
15695 5' -52.9 NC_004065.1 + 72597 0.67 0.98104
Target:  5'- cACGAAgGAUGUCCcuGGGCAGCAc--- -3'
miRNA:   3'- cUGCUU-CUGCAGGu-CCUGUCGUcuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.