Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15695 | 5' | -52.9 | NC_004065.1 | + | 71452 | 0.74 | 0.755945 |
Target: 5'- cGGCGAGGACGauaagCCAGGGCAGgAGc-- -3' miRNA: 3'- -CUGCUUCUGCa----GGUCCUGUCgUCuau -5' |
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15695 | 5' | -52.9 | NC_004065.1 | + | 60561 | 0.74 | 0.735521 |
Target: 5'- cGACGGAGACG-CCGGGuccgcacACGGCGGGg- -3' miRNA: 3'- -CUGCUUCUGCaGGUCC-------UGUCGUCUau -5' |
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15695 | 5' | -52.9 | NC_004065.1 | + | 56020 | 0.66 | 0.990806 |
Target: 5'- uGACGAGGAUGaCCGGGuacuCGGCcucGGAg- -3' miRNA: 3'- -CUGCUUCUGCaGGUCCu---GUCG---UCUau -5' |
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15695 | 5' | -52.9 | NC_004065.1 | + | 55405 | 0.66 | 0.986104 |
Target: 5'- gGACaGAAGACcggccugaugggcuGUCCGGGGC-GCGGGUc -3' miRNA: 3'- -CUG-CUUCUG--------------CAGGUCCUGuCGUCUAu -5' |
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15695 | 5' | -52.9 | NC_004065.1 | + | 53795 | 0.76 | 0.645549 |
Target: 5'- aGGCGGAGGCa-CCGGGACGGUGGGUGu -3' miRNA: 3'- -CUGCUUCUGcaGGUCCUGUCGUCUAU- -5' |
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15695 | 5' | -52.9 | NC_004065.1 | + | 39803 | 1.06 | 0.011476 |
Target: 5'- gGACGAAGACGUCCAGGACAGCAGAUAc -3' miRNA: 3'- -CUGCUUCUGCAGGUCCUGUCGUCUAU- -5' |
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15695 | 5' | -52.9 | NC_004065.1 | + | 39107 | 0.71 | 0.889787 |
Target: 5'- uGGCGAuGGGCGUCCc--GCGGCAGAUGu -3' miRNA: 3'- -CUGCU-UCUGCAGGuccUGUCGUCUAU- -5' |
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15695 | 5' | -52.9 | NC_004065.1 | + | 32925 | 0.68 | 0.965035 |
Target: 5'- cGACGAAGACGgCCGGucGGCucccgcGCGGAUGc -3' miRNA: 3'- -CUGCUUCUGCaGGUC--CUGu-----CGUCUAU- -5' |
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15695 | 5' | -52.9 | NC_004065.1 | + | 29733 | 0.68 | 0.968204 |
Target: 5'- gGACGAuGAgaUCCuccGGACAGCAGAg- -3' miRNA: 3'- -CUGCUuCUgcAGGu--CCUGUCGUCUau -5' |
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15695 | 5' | -52.9 | NC_004065.1 | + | 25689 | 0.65 | 0.991506 |
Target: 5'- cGGCGAGGuaguagauggcguCGUCCGGGggcccgcgauaACAGUAGAa- -3' miRNA: 3'- -CUGCUUCu------------GCAGGUCC-----------UGUCGUCUau -5' |
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15695 | 5' | -52.9 | NC_004065.1 | + | 19754 | 0.72 | 0.845099 |
Target: 5'- aGACGggGGCGUgCGGGGguGUGGGc- -3' miRNA: 3'- -CUGCuuCUGCAgGUCCUguCGUCUau -5' |
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15695 | 5' | -52.9 | NC_004065.1 | + | 19263 | 0.69 | 0.940865 |
Target: 5'- -uCGGAGuCGUcgaucaguuugcgCCGGGACAGCAGGg- -3' miRNA: 3'- cuGCUUCuGCA-------------GGUCCUGUCGUCUau -5' |
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15695 | 5' | -52.9 | NC_004065.1 | + | 18908 | 0.68 | 0.96165 |
Target: 5'- uGGCGAAGAUG-CUacaAGaGACGGCAGAg- -3' miRNA: 3'- -CUGCUUCUGCaGG---UC-CUGUCGUCUau -5' |
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15695 | 5' | -52.9 | NC_004065.1 | + | 16866 | 0.81 | 0.394449 |
Target: 5'- cGGCGAGGGCGagCCAGaACAGCAGAUAg -3' miRNA: 3'- -CUGCUUCUGCa-GGUCcUGUCGUCUAU- -5' |
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15695 | 5' | -52.9 | NC_004065.1 | + | 8665 | 0.67 | 0.978622 |
Target: 5'- cACGGAGACGUUCggcguacaaaucgAGGAUAGCcGAUc -3' miRNA: 3'- cUGCUUCUGCAGG-------------UCCUGUCGuCUAu -5' |
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15695 | 5' | -52.9 | NC_004065.1 | + | 7133 | 0.71 | 0.882882 |
Target: 5'- cGACGAcgAGACGaCCGGGucuauggaACGGCAGAa- -3' miRNA: 3'- -CUGCU--UCUGCaGGUCC--------UGUCGUCUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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