miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15695 5' -52.9 NC_004065.1 + 32925 0.68 0.965035
Target:  5'- cGACGAAGACGgCCGGucGGCucccgcGCGGAUGc -3'
miRNA:   3'- -CUGCUUCUGCaGGUC--CUGu-----CGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 128451 0.7 0.909115
Target:  5'- cGGCGGAGGCGUCCGcGGGCGcgauCAGGc- -3'
miRNA:   3'- -CUGCUUCUGCAGGU-CCUGUc---GUCUau -5'
15695 5' -52.9 NC_004065.1 + 165833 0.7 0.920816
Target:  5'- -uUGAAGAcCGUCacuaGGGACGGCGGGg- -3'
miRNA:   3'- cuGCUUCU-GCAGg---UCCUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 121638 0.69 0.936563
Target:  5'- cACGggGACGUgUAGcucCAGCAGGUAa -3'
miRNA:   3'- cUGCuuCUGCAgGUCcu-GUCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 141826 0.69 0.936563
Target:  5'- -uCGGAGACGg--AGGACGGUAGGUAc -3'
miRNA:   3'- cuGCUUCUGCaggUCCUGUCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 185490 0.68 0.954214
Target:  5'- aGAUGAGGACa-CCGGGACAGguGc-- -3'
miRNA:   3'- -CUGCUUCUGcaGGUCCUGUCguCuau -5'
15695 5' -52.9 NC_004065.1 + 197829 0.68 0.96165
Target:  5'- -uUGggGuCGUCCAGGucccagggGCGGCAGGa- -3'
miRNA:   3'- cuGCuuCuGCAGGUCC--------UGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 222270 0.68 0.96165
Target:  5'- cGACGGccuGACGUCCGaGACcaGGUAGAUGu -3'
miRNA:   3'- -CUGCUu--CUGCAGGUcCUG--UCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 102601 0.68 0.96165
Target:  5'- cGACGAAgcGACGUCUGGGACGGgAc--- -3'
miRNA:   3'- -CUGCUU--CUGCAGGUCCUGUCgUcuau -5'
15695 5' -52.9 NC_004065.1 + 119529 0.7 0.902906
Target:  5'- cGCGggGACGUggucgagggCCAGGGCGaacacGCAGAa- -3'
miRNA:   3'- cUGCuuCUGCA---------GGUCCUGU-----CGUCUau -5'
15695 5' -52.9 NC_004065.1 + 7133 0.71 0.882882
Target:  5'- cGACGAcgAGACGaCCGGGucuauggaACGGCAGAa- -3'
miRNA:   3'- -CUGCU--UCUGCaGGUCC--------UGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 200548 0.71 0.882882
Target:  5'- uGGCGAGGGCGaCgGGcGGCAGCGGGa- -3'
miRNA:   3'- -CUGCUUCUGCaGgUC-CUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 60561 0.74 0.735521
Target:  5'- cGACGGAGACG-CCGGGuccgcacACGGCGGGg- -3'
miRNA:   3'- -CUGCUUCUGCaGGUCC-------UGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 96748 0.74 0.746274
Target:  5'- gGGCGAGGGCGagCAGGGCgacGGCGGAg- -3'
miRNA:   3'- -CUGCUUCUGCagGUCCUG---UCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 71452 0.74 0.755945
Target:  5'- cGGCGAGGACGauaagCCAGGGCAGgAGc-- -3'
miRNA:   3'- -CUGCUUCUGCa----GGUCCUGUCgUCuau -5'
15695 5' -52.9 NC_004065.1 + 109123 0.74 0.765505
Target:  5'- gGACGGAGGUGgCgGGGACGGCGGGUGa -3'
miRNA:   3'- -CUGCUUCUGCaGgUCCUGUCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 101849 0.72 0.836931
Target:  5'- cGCGggGGCGUCgGGGGCGcuaucgccgccGCAGAc- -3'
miRNA:   3'- cUGCuuCUGCAGgUCCUGU-----------CGUCUau -5'
15695 5' -52.9 NC_004065.1 + 19754 0.72 0.845099
Target:  5'- aGACGggGGCGUgCGGGGguGUGGGc- -3'
miRNA:   3'- -CUGCuuCUGCAgGUCCUguCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 148758 0.72 0.860842
Target:  5'- gGGCGuccucGGCGUCCAGGAUgaagaacaGGCAGAa- -3'
miRNA:   3'- -CUGCuu---CUGCAGGUCCUG--------UCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 108275 0.71 0.868405
Target:  5'- cAUGggGACGUCCGcGGACA-CGGAUu -3'
miRNA:   3'- cUGCuuCUGCAGGU-CCUGUcGUCUAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.