miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15695 5' -52.9 NC_004065.1 + 97229 0.67 0.983055
Target:  5'- cGCGAcGGACGgCCGGcGCAGCAGGc- -3'
miRNA:   3'- cUGCU-UCUGCaGGUCcUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 225617 0.66 0.986595
Target:  5'- -cCGcGGGCGUCCAGaGACAGaGGAc- -3'
miRNA:   3'- cuGCuUCUGCAGGUC-CUGUCgUCUau -5'
15695 5' -52.9 NC_004065.1 + 91649 0.66 0.988137
Target:  5'- gGACGuAGACGUCCucuGcGACgAGCuAGGUAu -3'
miRNA:   3'- -CUGCuUCUGCAGGu--C-CUG-UCG-UCUAU- -5'
15695 5' -52.9 NC_004065.1 + 96869 0.66 0.989403
Target:  5'- cGACGAGGACGaaggggucagaucUCCcgGGGAguGCAGc-- -3'
miRNA:   3'- -CUGCUUCUGC-------------AGG--UCCUguCGUCuau -5'
15695 5' -52.9 NC_004065.1 + 90418 0.66 0.990806
Target:  5'- cGGCGGAGGCGgcggagCC-GG-CGGCAGGa- -3'
miRNA:   3'- -CUGCUUCUGCa-----GGuCCuGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 8665 0.67 0.978622
Target:  5'- cACGGAGACGUUCggcguacaaaucgAGGAUAGCcGAUc -3'
miRNA:   3'- cUGCUUCUGCAGG-------------UCCUGUCGuCUAu -5'
15695 5' -52.9 NC_004065.1 + 149731 0.68 0.968204
Target:  5'- uGACGAaccaGGGCGcCgAGGACAGCAu--- -3'
miRNA:   3'- -CUGCU----UCUGCaGgUCCUGUCGUcuau -5'
15695 5' -52.9 NC_004065.1 + 18908 0.68 0.96165
Target:  5'- uGGCGAAGAUG-CUacaAGaGACGGCAGAg- -3'
miRNA:   3'- -CUGCUUCUGCaGG---UC-CUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 81661 0.69 0.941331
Target:  5'- gGACGAgGGACGggcCCGGGugGGCAaGUAc -3'
miRNA:   3'- -CUGCU-UCUGCa--GGUCCugUCGUcUAU- -5'
15695 5' -52.9 NC_004065.1 + 19263 0.69 0.940865
Target:  5'- -uCGGAGuCGUcgaucaguuugcgCCGGGACAGCAGGg- -3'
miRNA:   3'- cuGCUUCuGCA-------------GGUCCUGUCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 118305 0.7 0.926306
Target:  5'- gGACGAAGACGUgUAcGACgAGCAGGg- -3'
miRNA:   3'- -CUGCUUCUGCAgGUcCUG-UCGUCUau -5'
15695 5' -52.9 NC_004065.1 + 39107 0.71 0.889787
Target:  5'- uGGCGAuGGGCGUCCc--GCGGCAGAUGu -3'
miRNA:   3'- -CUGCU-UCUGCAGGuccUGUCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 148654 0.72 0.82004
Target:  5'- aGACGuacuucGGCGUCCAGGACAucaGCAGcAUGu -3'
miRNA:   3'- -CUGCuu----CUGCAGGUCCUGU---CGUC-UAU- -5'
15695 5' -52.9 NC_004065.1 + 53795 0.76 0.645549
Target:  5'- aGGCGGAGGCa-CCGGGACGGUGGGUGu -3'
miRNA:   3'- -CUGCUUCUGcaGGUCCUGUCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 39803 1.06 0.011476
Target:  5'- gGACGAAGACGUCCAGGACAGCAGAUAc -3'
miRNA:   3'- -CUGCUUCUGCAGGUCCUGUCGUCUAU- -5'
15695 5' -52.9 NC_004065.1 + 118826 0.65 0.99173
Target:  5'- cGACGAGGACGa-CGGGACAGaaaacccaaacgGGAUGg -3'
miRNA:   3'- -CUGCUUCUGCagGUCCUGUCg-----------UCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.