miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15696 3' -55.8 NC_004065.1 + 63741 0.66 0.950651
Target:  5'- -gCAcCUgGCUgcGCGACGGCGcCUGGc -3'
miRNA:   3'- uaGUuGAgCGA--CGCUGCCGCaGACUa -5'
15696 3' -55.8 NC_004065.1 + 6077 0.66 0.946446
Target:  5'- uUCGACUaCGCcGCG-UGGCGUCaGAg -3'
miRNA:   3'- uAGUUGA-GCGaCGCuGCCGCAGaCUa -5'
15696 3' -55.8 NC_004065.1 + 6378 0.66 0.942011
Target:  5'- --gAGCUgGCgGCGGCGGCGUgaUGGUu -3'
miRNA:   3'- uagUUGAgCGaCGCUGCCGCAg-ACUA- -5'
15696 3' -55.8 NC_004065.1 + 141120 0.66 0.937344
Target:  5'- gAUgGACUCGCUgGCGGCGGCcuucagggccGUCUu-- -3'
miRNA:   3'- -UAgUUGAGCGA-CGCUGCCG----------CAGAcua -5'
15696 3' -55.8 NC_004065.1 + 140248 0.66 0.932445
Target:  5'- cGUCAGCUccaCGCUcaugGCGACGGCGg--GGUu -3'
miRNA:   3'- -UAGUUGA---GCGA----CGCUGCCGCagaCUA- -5'
15696 3' -55.8 NC_004065.1 + 109803 0.67 0.921942
Target:  5'- cUCgAGgUCGCUGaCGACGGUGUCg--- -3'
miRNA:   3'- uAG-UUgAGCGAC-GCUGCCGCAGacua -5'
15696 3' -55.8 NC_004065.1 + 14977 0.67 0.898138
Target:  5'- uGUgGAUUUGCUggGUGACGGCGuggaUCUGAUg -3'
miRNA:   3'- -UAgUUGAGCGA--CGCUGCCGC----AGACUA- -5'
15696 3' -55.8 NC_004065.1 + 197961 0.68 0.884866
Target:  5'- -aCGGCg-GCcGCGACGGCGUCgGAc -3'
miRNA:   3'- uaGUUGagCGaCGCUGCCGCAGaCUa -5'
15696 3' -55.8 NC_004065.1 + 27766 0.68 0.877898
Target:  5'- cAUCGAgaCGCUGCGcCGcCGUCUGGa -3'
miRNA:   3'- -UAGUUgaGCGACGCuGCcGCAGACUa -5'
15696 3' -55.8 NC_004065.1 + 195111 0.7 0.78839
Target:  5'- cGUCAGCUCGC--CGGCGGUGUCg--- -3'
miRNA:   3'- -UAGUUGAGCGacGCUGCCGCAGacua -5'
15696 3' -55.8 NC_004065.1 + 113959 0.71 0.731885
Target:  5'- cGUCGGCggcggcaGCgGCGACGGCGUCggGAg -3'
miRNA:   3'- -UAGUUGag-----CGaCGCUGCCGCAGa-CUa -5'
15696 3' -55.8 NC_004065.1 + 101512 0.72 0.6924
Target:  5'- -aCAACUCGCgaguaGCGuCGGCGUCUa-- -3'
miRNA:   3'- uaGUUGAGCGa----CGCuGCCGCAGAcua -5'
15696 3' -55.8 NC_004065.1 + 40906 1.04 0.008009
Target:  5'- cAUCAACUCGCUGCGACGGCGUCUGAUa -3'
miRNA:   3'- -UAGUUGAGCGACGCUGCCGCAGACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.