miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15696 5' -54.9 NC_004065.1 + 122478 0.66 0.979861
Target:  5'- aCGAcccGCCGGCC--CGCUCGAGg-- -3'
miRNA:   3'- -GCUaucUGGCCGGaaGCGAGCUCaga -5'
15696 5' -54.9 NC_004065.1 + 202726 0.66 0.975249
Target:  5'- uGGUAGGaCGGCCguuUCGgCUCGuGUCc -3'
miRNA:   3'- gCUAUCUgGCCGGa--AGC-GAGCuCAGa -5'
15696 5' -54.9 NC_004065.1 + 55409 0.66 0.972674
Target:  5'- aGA-AGACCGGCCUgauggGCUguccggggcgCGGGUCUu -3'
miRNA:   3'- gCUaUCUGGCCGGAag---CGA----------GCUCAGA- -5'
15696 5' -54.9 NC_004065.1 + 210968 0.66 0.972674
Target:  5'- -cGUAGACaaaGGCgUcgaaaCGCUCGGGUCUc -3'
miRNA:   3'- gcUAUCUGg--CCGgAa----GCGAGCUCAGA- -5'
15696 5' -54.9 NC_004065.1 + 6695 0.67 0.963795
Target:  5'- uGGUGGACgggUGGCCguuacCGUUCGgAGUCUa -3'
miRNA:   3'- gCUAUCUG---GCCGGaa---GCGAGC-UCAGA- -5'
15696 5' -54.9 NC_004065.1 + 194625 0.67 0.955372
Target:  5'- aCGA-AGACCGGCCgccgaucgccacgUCGCUcgCGAGcCa -3'
miRNA:   3'- -GCUaUCUGGCCGGa------------AGCGA--GCUCaGa -5'
15696 5' -54.9 NC_004065.1 + 118503 0.67 0.953075
Target:  5'- gCGGUGG---GGCCUgUCGCUCGGGUUc -3'
miRNA:   3'- -GCUAUCuggCCGGA-AGCGAGCUCAGa -5'
15696 5' -54.9 NC_004065.1 + 19073 0.68 0.940401
Target:  5'- aCGAggaggAGACCGcGCCcagGUUCGGGUCa -3'
miRNA:   3'- -GCUa----UCUGGC-CGGaagCGAGCUCAGa -5'
15696 5' -54.9 NC_004065.1 + 28449 0.69 0.920352
Target:  5'- gGAagAGGCaGGCUUcgaaggcuacUCGCUCGAGUCg -3'
miRNA:   3'- gCUa-UCUGgCCGGA----------AGCGAGCUCAGa -5'
15696 5' -54.9 NC_004065.1 + 161909 0.7 0.883528
Target:  5'- ----cGACCGGUCacUCGuCUCGAGUCa -3'
miRNA:   3'- gcuauCUGGCCGGa-AGC-GAGCUCAGa -5'
15696 5' -54.9 NC_004065.1 + 157100 0.7 0.879414
Target:  5'- uCGGUuGGCCGGCCgcggaggCGCgacucgcgaacgaggUCGAGUCg -3'
miRNA:   3'- -GCUAuCUGGCCGGaa-----GCG---------------AGCUCAGa -5'
15696 5' -54.9 NC_004065.1 + 218252 0.71 0.839129
Target:  5'- uGAUAGGgugcaUCGGCUUUUGCUCGuucGUCUg -3'
miRNA:   3'- gCUAUCU-----GGCCGGAAGCGAGCu--CAGA- -5'
15696 5' -54.9 NC_004065.1 + 158782 0.71 0.822834
Target:  5'- aGAUGcGCCGGUCg-CGCUCGcAGUCUg -3'
miRNA:   3'- gCUAUcUGGCCGGaaGCGAGC-UCAGA- -5'
15696 5' -54.9 NC_004065.1 + 40868 1.09 0.006116
Target:  5'- aCGAUAGACCGGCCUUCGCUCGAGUCUa -3'
miRNA:   3'- -GCUAUCUGGCCGGAAGCGAGCUCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.