miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 126132 0.66 0.998622
Target:  5'- gCUGGAUGCgGUCggCGUgCUGCGAgaAGUCc -3'
miRNA:   3'- -GGCUUGCG-CAGgaGCA-GAUGCU--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 108761 0.66 0.998622
Target:  5'- gCCGAGC-CGUCgCggUCGUCgACGAGGa- -3'
miRNA:   3'- -GGCUUGcGCAG-G--AGCAGaUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 91148 0.66 0.998546
Target:  5'- uCCGAgcucgcguucagcuACGCGUCUaucuaucuugauUcCGUCUACGAAuUCa -3'
miRNA:   3'- -GGCU--------------UGCGCAGG------------A-GCAGAUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 10526 0.66 0.998354
Target:  5'- aCGAuCGCGaCCgUCGUauuCGAGGUCu -3'
miRNA:   3'- gGCUuGCGCaGG-AGCAgauGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 121473 0.66 0.998354
Target:  5'- gUCGGucgGCGCGUCCgcgggCGUgaaggugGCGAAGUUc -3'
miRNA:   3'- -GGCU---UGCGCAGGa----GCAga-----UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 186833 0.66 0.998354
Target:  5'- aCgGAGCGCcgccGUCCUCGguguagACGuuGUCg -3'
miRNA:   3'- -GgCUUGCG----CAGGAGCaga---UGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 78024 0.66 0.998354
Target:  5'- gCUGAGCGCGcugaccuaCCUgGUCcUGCGucAGGUCg -3'
miRNA:   3'- -GGCUUGCGCa-------GGAgCAG-AUGC--UUCAG- -5'
15697 3' -51.8 NC_004065.1 + 44797 0.66 0.998354
Target:  5'- uCCG-ACGUGUCCUCcgaUACGGAuUCu -3'
miRNA:   3'- -GGCuUGCGCAGGAGcagAUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 40819 0.66 0.998354
Target:  5'- -aGGACGCGUUCggccgCGUCccugACGuuGUCc -3'
miRNA:   3'- ggCUUGCGCAGGa----GCAGa---UGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 104134 0.66 0.998236
Target:  5'- gCGAGCGgaUCCUCGUCgucgccuuccgcgGCGguGUCg -3'
miRNA:   3'- gGCUUGCgcAGGAGCAGa------------UGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 223352 0.66 0.998173
Target:  5'- gCGGGCacggccucgGCGUCCgccgucggaagcugCGUCgACGGAGUCc -3'
miRNA:   3'- gGCUUG---------CGCAGGa-------------GCAGaUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 210711 0.66 0.998044
Target:  5'- cCCGAGCGUuucgacGcCUUUGUCUACGGuguaacguGUCa -3'
miRNA:   3'- -GGCUUGCG------CaGGAGCAGAUGCUu-------CAG- -5'
15697 3' -51.8 NC_004065.1 + 141980 0.66 0.997976
Target:  5'- gUCGGGaGCGUCCUUGUCgcuaaccguuuCGAaauAGUCa -3'
miRNA:   3'- -GGCUUgCGCAGGAGCAGau---------GCU---UCAG- -5'
15697 3' -51.8 NC_004065.1 + 12589 0.66 0.997685
Target:  5'- gCGGACGaUGUCUUUGU---CGAAGUCa -3'
miRNA:   3'- gGCUUGC-GCAGGAGCAgauGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 176871 0.66 0.997685
Target:  5'- gCCGGGCGCccgcuaucaUCCUCGUCUGCc----- -3'
miRNA:   3'- -GGCUUGCGc--------AGGAGCAGAUGcuucag -5'
15697 3' -51.8 NC_004065.1 + 96773 0.66 0.997685
Target:  5'- cUCGGACuCGUCgUCGUCcuccgACGAGGa- -3'
miRNA:   3'- -GGCUUGcGCAGgAGCAGa----UGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 85794 0.66 0.997685
Target:  5'- aCCGAgGCGCGagaaCCggCGUCgGCGAgAGUCu -3'
miRNA:   3'- -GGCU-UGCGCa---GGa-GCAGaUGCU-UCAG- -5'
15697 3' -51.8 NC_004065.1 + 32273 0.66 0.997685
Target:  5'- uCCGAGugcccgcugucCGCGUCCUCgGUCUccucguCGGAGcCc -3'
miRNA:   3'- -GGCUU-----------GCGCAGGAG-CAGAu-----GCUUCaG- -5'
15697 3' -51.8 NC_004065.1 + 6163 0.66 0.997273
Target:  5'- aCCGGACGC-----UGUCUGCGAGGcUCg -3'
miRNA:   3'- -GGCUUGCGcaggaGCAGAUGCUUC-AG- -5'
15697 3' -51.8 NC_004065.1 + 202772 0.66 0.997273
Target:  5'- uUGAGCGCG-CCUCugaucuGUCUGgGuguGGUCa -3'
miRNA:   3'- gGCUUGCGCaGGAG------CAGAUgCu--UCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.