miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 41061 1.12 0.009227
Target:  5'- gCCGAACGCGUCCUCGUCUACGAAGUCu -3'
miRNA:   3'- -GGCUUGCGCAGGAGCAGAUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 133435 0.78 0.69128
Target:  5'- uUCGGGCGCGUcggCCUCGuUCUGCGAuuguuccgccucGGUCa -3'
miRNA:   3'- -GGCUUGCGCA---GGAGC-AGAUGCU------------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 123555 0.76 0.777642
Target:  5'- gCGc-CGCGUCCUCGUCgUACG-GGUCg -3'
miRNA:   3'- gGCuuGCGCAGGAGCAG-AUGCuUCAG- -5'
15697 3' -51.8 NC_004065.1 + 122371 0.74 0.876034
Target:  5'- uCCGAGCagcccGCGuUCCUgGUCUGCGAcguGUCc -3'
miRNA:   3'- -GGCUUG-----CGC-AGGAgCAGAUGCUu--CAG- -5'
15697 3' -51.8 NC_004065.1 + 102542 0.74 0.876034
Target:  5'- cUCG-ACGCGUCCUCGUCcgaGAGGg- -3'
miRNA:   3'- -GGCuUGCGCAGGAGCAGaugCUUCag -5'
15697 3' -51.8 NC_004065.1 + 175754 0.73 0.902626
Target:  5'- gCGGACGCGUUCU-GUCUACuGAcGGUCc -3'
miRNA:   3'- gGCUUGCGCAGGAgCAGAUG-CU-UCAG- -5'
15697 3' -51.8 NC_004065.1 + 47724 0.73 0.902626
Target:  5'- cUCGAGCGUGgCCUUGaUC-ACGggGUCa -3'
miRNA:   3'- -GGCUUGCGCaGGAGC-AGaUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 127747 0.73 0.908718
Target:  5'- aCGAcgcGCGCcuuGUCCUCGUCgguggcgcCGggGUCg -3'
miRNA:   3'- gGCU---UGCG---CAGGAGCAGau------GCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 143521 0.72 0.940444
Target:  5'- gUGAGCaGCGUCCUCGacgUCUGgGAGGg- -3'
miRNA:   3'- gGCUUG-CGCAGGAGC---AGAUgCUUCag -5'
15697 3' -51.8 NC_004065.1 + 30818 0.72 0.940444
Target:  5'- aCCGucgcgguGCGCGUCCUCGcgacccUCgACGAAGcCg -3'
miRNA:   3'- -GGCu------UGCGCAGGAGC------AGaUGCUUCaG- -5'
15697 3' -51.8 NC_004065.1 + 118108 0.72 0.914582
Target:  5'- gCCcAugGCGUCuCUCGUCgccgcgcggACGAGGUUg -3'
miRNA:   3'- -GGcUugCGCAG-GAGCAGa--------UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 176399 0.71 0.949182
Target:  5'- aCGGACGC-UCCUCGUC--CGAAGa- -3'
miRNA:   3'- gGCUUGCGcAGGAGCAGauGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 132398 0.71 0.949182
Target:  5'- cCUGGGCGCGaUCCUgagCGUCUACGuGGa- -3'
miRNA:   3'- -GGCUUGCGC-AGGA---GCAGAUGCuUCag -5'
15697 3' -51.8 NC_004065.1 + 224884 0.71 0.957022
Target:  5'- uCCGGACGCGUacaCGUCcACGguGUCg -3'
miRNA:   3'- -GGCUUGCGCAggaGCAGaUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 151685 0.71 0.953213
Target:  5'- aCCGccAGCGCGggcgCCcugcaUCGUCUGCGucgGGUCg -3'
miRNA:   3'- -GGC--UUGCGCa---GG-----AGCAGAUGCu--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 81413 0.71 0.944927
Target:  5'- cCCGGGCcCGUcCCUCGUCcccgGCGGAGa- -3'
miRNA:   3'- -GGCUUGcGCA-GGAGCAGa---UGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 159717 0.71 0.944927
Target:  5'- gCCGAACGCG-CCgaCGUCUcgcaaacaacgACGAcGUCg -3'
miRNA:   3'- -GGCUUGCGCaGGa-GCAGA-----------UGCUuCAG- -5'
15697 3' -51.8 NC_004065.1 + 34438 0.7 0.963994
Target:  5'- cUCGAGCcCGUCCgaGUCUucCGAGGUCg -3'
miRNA:   3'- -GGCUUGcGCAGGagCAGAu-GCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 208290 0.7 0.967165
Target:  5'- uCUGAGCGUG-CUgCGUCguaACGAGGUCu -3'
miRNA:   3'- -GGCUUGCGCaGGaGCAGa--UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 159444 0.7 0.972905
Target:  5'- uCCGAucgACGuCGUCgUUGUUUGCGAGacGUCg -3'
miRNA:   3'- -GGCU---UGC-GCAGgAGCAGAUGCUU--CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.