miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 110060 0.68 0.992369
Target:  5'- aCGAGgGCGUUCUCGUCgaacgugcccGCGgcGUa -3'
miRNA:   3'- gGCUUgCGCAGGAGCAGa---------UGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 199052 0.68 0.992369
Target:  5'- gCGAACGCGcUCCU-GUgUUGCGAAGa- -3'
miRNA:   3'- gGCUUGCGC-AGGAgCA-GAUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 194856 0.68 0.992369
Target:  5'- aCCgGGACGaCGgCUUCGUCUuCGAGGUg -3'
miRNA:   3'- -GG-CUUGC-GCaGGAGCAGAuGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 108632 0.68 0.991295
Target:  5'- uUGAGCGCGUCgUCGUCcuCGAAc-- -3'
miRNA:   3'- gGCUUGCGCAGgAGCAGauGCUUcag -5'
15697 3' -51.8 NC_004065.1 + 217198 0.68 0.991295
Target:  5'- -aGGACGuCGUCCcgggugucgCGUCcgaggACGAAGUCu -3'
miRNA:   3'- ggCUUGC-GCAGGa--------GCAGa----UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 85175 0.68 0.988794
Target:  5'- aUGAACuGCGUCgUCGUCgucACGAaagcuaGGUCc -3'
miRNA:   3'- gGCUUG-CGCAGgAGCAGa--UGCU------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 206784 0.68 0.98735
Target:  5'- uCCGAuuCGCGUCCgcgcuaucgcCGUCUgguGCGuGGUCu -3'
miRNA:   3'- -GGCUu-GCGCAGGa---------GCAGA---UGCuUCAG- -5'
15697 3' -51.8 NC_004065.1 + 191249 0.68 0.991295
Target:  5'- gCCGAcuugAUGUGauccagCCUCGUCU-CGAAGUg -3'
miRNA:   3'- -GGCU----UGCGCa-----GGAGCAGAuGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 50853 0.67 0.993334
Target:  5'- gCCGGGCGCGgggCCUCug--ACGGAGa- -3'
miRNA:   3'- -GGCUUGCGCa--GGAGcagaUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 122512 0.67 0.994971
Target:  5'- gCCGcGCGCaccUCCUCGU--GCGAgcGGUCg -3'
miRNA:   3'- -GGCuUGCGc--AGGAGCAgaUGCU--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 229424 0.67 0.994971
Target:  5'- cCUGAGCGCGUaaCUgGUCUgccaccACGggGUg -3'
miRNA:   3'- -GGCUUGCGCAg-GAgCAGA------UGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 61692 0.67 0.995658
Target:  5'- uCCGcAGCGCGUCa-CGUCcGCGgcGUa -3'
miRNA:   3'- -GGC-UUGCGCAGgaGCAGaUGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 107078 0.67 0.995658
Target:  5'- gUGAGCuGCaUCCUCGUCUGgaacgcCGgcGUCg -3'
miRNA:   3'- gGCUUG-CGcAGGAGCAGAU------GCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 200633 0.67 0.996266
Target:  5'- aCCGAugGCGUCgcgCUCGag-GCGAGaUCg -3'
miRNA:   3'- -GGCUugCGCAG---GAGCagaUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 31250 0.67 0.994199
Target:  5'- gCGAcCGUGUCCgaUCGUCUcUGcGGUCg -3'
miRNA:   3'- gGCUuGCGCAGG--AGCAGAuGCuUCAG- -5'
15697 3' -51.8 NC_004065.1 + 195823 0.67 0.993334
Target:  5'- -gGGACGCGaaUCCUgCGgcgCgaugGCGGAGUCu -3'
miRNA:   3'- ggCUUGCGC--AGGA-GCa--Ga---UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 201003 0.67 0.994199
Target:  5'- aCCG-ACGCGUgagccgCCUCGU---CGAGGUCc -3'
miRNA:   3'- -GGCuUGCGCA------GGAGCAgauGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 30519 0.67 0.994199
Target:  5'- uCCGGGgGCGUUC-CGaaaACGAAGUCg -3'
miRNA:   3'- -GGCUUgCGCAGGaGCagaUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 89056 0.67 0.993692
Target:  5'- uUGGGCGCGUCCUUGaggagacaggggaaCUGCGAguGGUUc -3'
miRNA:   3'- gGCUUGCGCAGGAGCa-------------GAUGCU--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 78196 0.67 0.994199
Target:  5'- aCGAACGCGUaCC-CGUC-GCGc-GUCg -3'
miRNA:   3'- gGCUUGCGCA-GGaGCAGaUGCuuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.