miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 89056 0.67 0.993692
Target:  5'- uUGGGCGCGUCCUUGaggagacaggggaaCUGCGAguGGUUc -3'
miRNA:   3'- gGCUUGCGCAGGAGCa-------------GAUGCU--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 50853 0.67 0.993334
Target:  5'- gCCGGGCGCGgggCCUCug--ACGGAGa- -3'
miRNA:   3'- -GGCUUGCGCa--GGAGcagaUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 195823 0.67 0.993334
Target:  5'- -gGGACGCGaaUCCUgCGgcgCgaugGCGGAGUCu -3'
miRNA:   3'- ggCUUGCGC--AGGA-GCa--Ga---UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 229424 0.67 0.994971
Target:  5'- cCUGAGCGCGUaaCUgGUCUgccaccACGggGUg -3'
miRNA:   3'- -GGCUUGCGCAg-GAgCAGA------UGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 112279 0.66 0.996802
Target:  5'- gUCGu-CGuCGUCCUCGUCggGCGAGaaacucuuguuGUCg -3'
miRNA:   3'- -GGCuuGC-GCAGGAGCAGa-UGCUU-----------CAG- -5'
15697 3' -51.8 NC_004065.1 + 61587 0.66 0.996802
Target:  5'- cCCGGGucgcCGCGgcucucgCCgUCGagUGCGAGGUCg -3'
miRNA:   3'- -GGCUU----GCGCa------GG-AGCagAUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 121473 0.66 0.998354
Target:  5'- gUCGGucgGCGCGUCCgcgggCGUgaaggugGCGAAGUUc -3'
miRNA:   3'- -GGCU---UGCGCAGGa----GCAga-----UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 26990 0.66 0.996802
Target:  5'- aCGAcgACGUGUCgcgaaUCGUCgcGCGAAGUa -3'
miRNA:   3'- gGCU--UGCGCAGg----AGCAGa-UGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 77304 0.66 0.996998
Target:  5'- cUCGGcCGUGUUCUCGUCgcCGAuccgcgccagcuccgAGUCg -3'
miRNA:   3'- -GGCUuGCGCAGGAGCAGauGCU---------------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 108761 0.66 0.998622
Target:  5'- gCCGAGC-CGUCgCggUCGUCgACGAGGa- -3'
miRNA:   3'- -GGCUUGcGCAG-G--AGCAGaUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 126132 0.66 0.998622
Target:  5'- gCUGGAUGCgGUCggCGUgCUGCGAgaAGUCc -3'
miRNA:   3'- -GGCUUGCG-CAGgaGCA-GAUGCU--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 78024 0.66 0.998354
Target:  5'- gCUGAGCGCGcugaccuaCCUgGUCcUGCGucAGGUCg -3'
miRNA:   3'- -GGCUUGCGCa-------GGAgCAG-AUGC--UUCAG- -5'
15697 3' -51.8 NC_004065.1 + 44797 0.66 0.998354
Target:  5'- uCCG-ACGUGUCCUCcgaUACGGAuUCu -3'
miRNA:   3'- -GGCuUGCGCAGGAGcagAUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 40819 0.66 0.998354
Target:  5'- -aGGACGCGUUCggccgCGUCccugACGuuGUCc -3'
miRNA:   3'- ggCUUGCGCAGGa----GCAGa---UGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 104134 0.66 0.998236
Target:  5'- gCGAGCGgaUCCUCGUCgucgccuuccgcgGCGguGUCg -3'
miRNA:   3'- gGCUUGCgcAGGAGCAGa------------UGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 210711 0.66 0.998044
Target:  5'- cCCGAGCGUuucgacGcCUUUGUCUACGGuguaacguGUCa -3'
miRNA:   3'- -GGCUUGCG------CaGGAGCAGAUGCUu-------CAG- -5'
15697 3' -51.8 NC_004065.1 + 85794 0.66 0.997685
Target:  5'- aCCGAgGCGCGagaaCCggCGUCgGCGAgAGUCu -3'
miRNA:   3'- -GGCU-UGCGCa---GGa-GCAGaUGCU-UCAG- -5'
15697 3' -51.8 NC_004065.1 + 32273 0.66 0.997685
Target:  5'- uCCGAGugcccgcugucCGCGUCCUCgGUCUccucguCGGAGcCc -3'
miRNA:   3'- -GGCUU-----------GCGCAGGAG-CAGAu-----GCUUCaG- -5'
15697 3' -51.8 NC_004065.1 + 12589 0.66 0.997685
Target:  5'- gCGGACGaUGUCUUUGU---CGAAGUCa -3'
miRNA:   3'- gGCUUGC-GCAGGAGCAgauGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 45053 0.66 0.997273
Target:  5'- aCGG--GCGUCCUCGUCgaaauCGAGuUCg -3'
miRNA:   3'- gGCUugCGCAGGAGCAGau---GCUUcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.