miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 141794 0.67 0.994971
Target:  5'- gCCGAagaGCGCGUCCUCG-----GAGGUg -3'
miRNA:   3'- -GGCU---UGCGCAGGAGCagaugCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 61692 0.67 0.995658
Target:  5'- uCCGcAGCGCGUCa-CGUCcGCGgcGUa -3'
miRNA:   3'- -GGC-UUGCGCAGgaGCAGaUGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 107078 0.67 0.995658
Target:  5'- gUGAGCuGCaUCCUCGUCUGgaacgcCGgcGUCg -3'
miRNA:   3'- gGCUUG-CGcAGGAGCAGAU------GCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 200633 0.67 0.996266
Target:  5'- aCCGAugGCGUCgcgCUCGag-GCGAGaUCg -3'
miRNA:   3'- -GGCUugCGCAG---GAGCagaUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 26990 0.66 0.996802
Target:  5'- aCGAcgACGUGUCgcgaaUCGUCgcGCGAAGUa -3'
miRNA:   3'- gGCU--UGCGCAGg----AGCAGa-UGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 61587 0.66 0.996802
Target:  5'- cCCGGGucgcCGCGgcucucgCCgUCGagUGCGAGGUCg -3'
miRNA:   3'- -GGCUU----GCGCa------GG-AGCagAUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 112279 0.66 0.996802
Target:  5'- gUCGu-CGuCGUCCUCGUCggGCGAGaaacucuuguuGUCg -3'
miRNA:   3'- -GGCuuGC-GCAGGAGCAGa-UGCUU-----------CAG- -5'
15697 3' -51.8 NC_004065.1 + 152817 0.66 0.996802
Target:  5'- -aGGACGauuucuacgaccUGUCCUaCGUCgauCGAGGUCg -3'
miRNA:   3'- ggCUUGC------------GCAGGA-GCAGau-GCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 77304 0.66 0.996998
Target:  5'- cUCGGcCGUGUUCUCGUCgcCGAuccgcgccagcuccgAGUCg -3'
miRNA:   3'- -GGCUuGCGCAGGAGCAGauGCU---------------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 42382 0.66 0.997273
Target:  5'- uCCG-GCGUGUCCcCGUCgUGCGccaaaacGGUCa -3'
miRNA:   3'- -GGCuUGCGCAGGaGCAG-AUGCu------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 6163 0.66 0.997273
Target:  5'- aCCGGACGC-----UGUCUGCGAGGcUCg -3'
miRNA:   3'- -GGCUUGCGcaggaGCAGAUGCUUC-AG- -5'
15697 3' -51.8 NC_004065.1 + 202772 0.66 0.997273
Target:  5'- uUGAGCGCG-CCUCugaucuGUCUGgGuguGGUCa -3'
miRNA:   3'- gGCUUGCGCaGGAG------CAGAUgCu--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 45053 0.66 0.997273
Target:  5'- aCGG--GCGUCCUCGUCgaaauCGAGuUCg -3'
miRNA:   3'- gGCUugCGCAGGAGCAGau---GCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 32273 0.66 0.997685
Target:  5'- uCCGAGugcccgcugucCGCGUCCUCgGUCUccucguCGGAGcCc -3'
miRNA:   3'- -GGCUU-----------GCGCAGGAG-CAGAu-----GCUUCaG- -5'
15697 3' -51.8 NC_004065.1 + 85794 0.66 0.997685
Target:  5'- aCCGAgGCGCGagaaCCggCGUCgGCGAgAGUCu -3'
miRNA:   3'- -GGCU-UGCGCa---GGa-GCAGaUGCU-UCAG- -5'
15697 3' -51.8 NC_004065.1 + 12589 0.66 0.997685
Target:  5'- gCGGACGaUGUCUUUGU---CGAAGUCa -3'
miRNA:   3'- gGCUUGC-GCAGGAGCAgauGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 176871 0.66 0.997685
Target:  5'- gCCGGGCGCccgcuaucaUCCUCGUCUGCc----- -3'
miRNA:   3'- -GGCUUGCGc--------AGGAGCAGAUGcuucag -5'
15697 3' -51.8 NC_004065.1 + 96773 0.66 0.997685
Target:  5'- cUCGGACuCGUCgUCGUCcuccgACGAGGa- -3'
miRNA:   3'- -GGCUUGcGCAGgAGCAGa----UGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 141980 0.66 0.997976
Target:  5'- gUCGGGaGCGUCCUUGUCgcuaaccguuuCGAaauAGUCa -3'
miRNA:   3'- -GGCUUgCGCAGGAGCAGau---------GCU---UCAG- -5'
15697 3' -51.8 NC_004065.1 + 210711 0.66 0.998044
Target:  5'- cCCGAGCGUuucgacGcCUUUGUCUACGGuguaacguGUCa -3'
miRNA:   3'- -GGCUUGCG------CaGGAGCAGAUGCUu-------CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.