miRNA display CGI


Results 81 - 91 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 223352 0.66 0.998173
Target:  5'- gCGGGCacggccucgGCGUCCgccgucggaagcugCGUCgACGGAGUCc -3'
miRNA:   3'- gGCUUG---------CGCAGGa-------------GCAGaUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 104134 0.66 0.998236
Target:  5'- gCGAGCGgaUCCUCGUCgucgccuuccgcgGCGguGUCg -3'
miRNA:   3'- gGCUUGCgcAGGAGCAGa------------UGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 186833 0.66 0.998354
Target:  5'- aCgGAGCGCcgccGUCCUCGguguagACGuuGUCg -3'
miRNA:   3'- -GgCUUGCG----CAGGAGCaga---UGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 10526 0.66 0.998354
Target:  5'- aCGAuCGCGaCCgUCGUauuCGAGGUCu -3'
miRNA:   3'- gGCUuGCGCaGG-AGCAgauGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 40819 0.66 0.998354
Target:  5'- -aGGACGCGUUCggccgCGUCccugACGuuGUCc -3'
miRNA:   3'- ggCUUGCGCAGGa----GCAGa---UGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 121473 0.66 0.998354
Target:  5'- gUCGGucgGCGCGUCCgcgggCGUgaaggugGCGAAGUUc -3'
miRNA:   3'- -GGCU---UGCGCAGGa----GCAga-----UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 78024 0.66 0.998354
Target:  5'- gCUGAGCGCGcugaccuaCCUgGUCcUGCGucAGGUCg -3'
miRNA:   3'- -GGCUUGCGCa-------GGAgCAG-AUGC--UUCAG- -5'
15697 3' -51.8 NC_004065.1 + 44797 0.66 0.998354
Target:  5'- uCCG-ACGUGUCCUCcgaUACGGAuUCu -3'
miRNA:   3'- -GGCuUGCGCAGGAGcagAUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 91148 0.66 0.998546
Target:  5'- uCCGAgcucgcguucagcuACGCGUCUaucuaucuugauUcCGUCUACGAAuUCa -3'
miRNA:   3'- -GGCU--------------UGCGCAGG------------A-GCAGAUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 126132 0.66 0.998622
Target:  5'- gCUGGAUGCgGUCggCGUgCUGCGAgaAGUCc -3'
miRNA:   3'- -GGCUUGCG-CAGgaGCA-GAUGCU--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 108761 0.66 0.998622
Target:  5'- gCCGAGC-CGUCgCggUCGUCgACGAGGa- -3'
miRNA:   3'- -GGCUUGcGCAG-G--AGCAGaUGCUUCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.