miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 45053 0.66 0.997273
Target:  5'- aCGG--GCGUCCUCGUCgaaauCGAGuUCg -3'
miRNA:   3'- gGCUugCGCAGGAGCAGau---GCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 6163 0.66 0.997273
Target:  5'- aCCGGACGC-----UGUCUGCGAGGcUCg -3'
miRNA:   3'- -GGCUUGCGcaggaGCAGAUGCUUC-AG- -5'
15697 3' -51.8 NC_004065.1 + 77304 0.66 0.996998
Target:  5'- cUCGGcCGUGUUCUCGUCgcCGAuccgcgccagcuccgAGUCg -3'
miRNA:   3'- -GGCUuGCGCAGGAGCAGauGCU---------------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 112279 0.66 0.996802
Target:  5'- gUCGu-CGuCGUCCUCGUCggGCGAGaaacucuuguuGUCg -3'
miRNA:   3'- -GGCuuGC-GCAGGAGCAGa-UGCUU-----------CAG- -5'
15697 3' -51.8 NC_004065.1 + 152817 0.66 0.996802
Target:  5'- -aGGACGauuucuacgaccUGUCCUaCGUCgauCGAGGUCg -3'
miRNA:   3'- ggCUUGC------------GCAGGA-GCAGau-GCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 61587 0.66 0.996802
Target:  5'- cCCGGGucgcCGCGgcucucgCCgUCGagUGCGAGGUCg -3'
miRNA:   3'- -GGCUU----GCGCa------GG-AGCagAUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 26990 0.66 0.996802
Target:  5'- aCGAcgACGUGUCgcgaaUCGUCgcGCGAAGUa -3'
miRNA:   3'- gGCU--UGCGCAGg----AGCAGa-UGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 200633 0.67 0.996266
Target:  5'- aCCGAugGCGUCgcgCUCGag-GCGAGaUCg -3'
miRNA:   3'- -GGCUugCGCAG---GAGCagaUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 61692 0.67 0.995658
Target:  5'- uCCGcAGCGCGUCa-CGUCcGCGgcGUa -3'
miRNA:   3'- -GGC-UUGCGCAGgaGCAGaUGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 107078 0.67 0.995658
Target:  5'- gUGAGCuGCaUCCUCGUCUGgaacgcCGgcGUCg -3'
miRNA:   3'- gGCUUG-CGcAGGAGCAGAU------GCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 141466 0.67 0.994971
Target:  5'- aCCGcACGCGgaucugCCugUCGUCgGCGcGGUCa -3'
miRNA:   3'- -GGCuUGCGCa-----GG--AGCAGaUGCuUCAG- -5'
15697 3' -51.8 NC_004065.1 + 229424 0.67 0.994971
Target:  5'- cCUGAGCGCGUaaCUgGUCUgccaccACGggGUg -3'
miRNA:   3'- -GGCUUGCGCAg-GAgCAGA------UGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 122512 0.67 0.994971
Target:  5'- gCCGcGCGCaccUCCUCGU--GCGAgcGGUCg -3'
miRNA:   3'- -GGCuUGCGc--AGGAGCAgaUGCU--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 210403 0.67 0.994971
Target:  5'- aUGGACGUgugGUCCUUGaUCgcgauCGGAGUCg -3'
miRNA:   3'- gGCUUGCG---CAGGAGC-AGau---GCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 141794 0.67 0.994971
Target:  5'- gCCGAagaGCGCGUCCUCG-----GAGGUg -3'
miRNA:   3'- -GGCU---UGCGCAGGAGCagaugCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 102131 0.67 0.994199
Target:  5'- gCCGccccgGCGUCgUCGUCUGCGgcGg- -3'
miRNA:   3'- -GGCuug--CGCAGgAGCAGAUGCuuCag -5'
15697 3' -51.8 NC_004065.1 + 201003 0.67 0.994199
Target:  5'- aCCG-ACGCGUgagccgCCUCGU---CGAGGUCc -3'
miRNA:   3'- -GGCuUGCGCA------GGAGCAgauGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 30519 0.67 0.994199
Target:  5'- uCCGGGgGCGUUC-CGaaaACGAAGUCg -3'
miRNA:   3'- -GGCUUgCGCAGGaGCagaUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 31250 0.67 0.994199
Target:  5'- gCGAcCGUGUCCgaUCGUCUcUGcGGUCg -3'
miRNA:   3'- gGCUuGCGCAGG--AGCAGAuGCuUCAG- -5'
15697 3' -51.8 NC_004065.1 + 78196 0.67 0.994199
Target:  5'- aCGAACGCGUaCC-CGUC-GCGc-GUCg -3'
miRNA:   3'- gGCUUGCGCA-GGaGCAGaUGCuuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.