miRNA display CGI


Results 41 - 60 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 89056 0.67 0.993692
Target:  5'- uUGGGCGCGUCCUUGaggagacaggggaaCUGCGAguGGUUc -3'
miRNA:   3'- gGCUUGCGCAGGAGCa-------------GAUGCU--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 50853 0.67 0.993334
Target:  5'- gCCGGGCGCGgggCCUCug--ACGGAGa- -3'
miRNA:   3'- -GGCUUGCGCa--GGAGcagaUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 195823 0.67 0.993334
Target:  5'- -gGGACGCGaaUCCUgCGgcgCgaugGCGGAGUCu -3'
miRNA:   3'- ggCUUGCGC--AGGA-GCa--Ga---UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 199052 0.68 0.992369
Target:  5'- gCGAACGCGcUCCU-GUgUUGCGAAGa- -3'
miRNA:   3'- gGCUUGCGC-AGGAgCA-GAUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 194856 0.68 0.992369
Target:  5'- aCCgGGACGaCGgCUUCGUCUuCGAGGUg -3'
miRNA:   3'- -GG-CUUGC-GCaGGAGCAGAuGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 63545 0.68 0.992369
Target:  5'- gCGAGCGUGUUCUUGguggCgGCGGAGa- -3'
miRNA:   3'- gGCUUGCGCAGGAGCa---GaUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 216953 0.68 0.992369
Target:  5'- cCCgGGACGaCGUCCUCGuaagucagcggUCUACGGAu-- -3'
miRNA:   3'- -GG-CUUGC-GCAGGAGC-----------AGAUGCUUcag -5'
15697 3' -51.8 NC_004065.1 + 110060 0.68 0.992369
Target:  5'- aCGAGgGCGUUCUCGUCgaacgugcccGCGgcGUa -3'
miRNA:   3'- gGCUUgCGCAGGAGCAGa---------UGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 108632 0.68 0.991295
Target:  5'- uUGAGCGCGUCgUCGUCcuCGAAc-- -3'
miRNA:   3'- gGCUUGCGCAGgAGCAGauGCUUcag -5'
15697 3' -51.8 NC_004065.1 + 191249 0.68 0.991295
Target:  5'- gCCGAcuugAUGUGauccagCCUCGUCU-CGAAGUg -3'
miRNA:   3'- -GGCU----UGCGCa-----GGAGCAGAuGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 76295 0.68 0.991295
Target:  5'- cCUGAGCuCGUUCUCGUCgagcCGGAGg- -3'
miRNA:   3'- -GGCUUGcGCAGGAGCAGau--GCUUCag -5'
15697 3' -51.8 NC_004065.1 + 217198 0.68 0.991295
Target:  5'- -aGGACGuCGUCCcgggugucgCGUCcgaggACGAAGUCu -3'
miRNA:   3'- ggCUUGC-GCAGGa--------GCAGa----UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 85175 0.68 0.988794
Target:  5'- aUGAACuGCGUCgUCGUCgucACGAaagcuaGGUCc -3'
miRNA:   3'- gGCUUG-CGCAGgAGCAGa--UGCU------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 206784 0.68 0.98735
Target:  5'- uCCGAuuCGCGUCCgcgcuaucgcCGUCUgguGCGuGGUCu -3'
miRNA:   3'- -GGCUu-GCGCAGGa---------GCAGA---UGCuUCAG- -5'
15697 3' -51.8 NC_004065.1 + 115321 0.69 0.985766
Target:  5'- aCCGAGgcCGCGUCCUCGcgcGCGccGUUg -3'
miRNA:   3'- -GGCUU--GCGCAGGAGCagaUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 60082 0.69 0.984035
Target:  5'- gCCGcGCuCGUCgUCGUCgaaGAGGUCg -3'
miRNA:   3'- -GGCuUGcGCAGgAGCAGaugCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 32170 0.69 0.98215
Target:  5'- aCG-GCGCGUCCcagaacgagGUCUGCGAgcuGGUCa -3'
miRNA:   3'- gGCuUGCGCAGGag-------CAGAUGCU---UCAG- -5'
15697 3' -51.8 NC_004065.1 + 197198 0.69 0.98215
Target:  5'- -gGAGCGUggacccggGUCUUCGUCUACGAGa-- -3'
miRNA:   3'- ggCUUGCG--------CAGGAGCAGAUGCUUcag -5'
15697 3' -51.8 NC_004065.1 + 190970 0.69 0.980101
Target:  5'- aUGAAUGCcUUCUcCGUgUGCGggGUCa -3'
miRNA:   3'- gGCUUGCGcAGGA-GCAgAUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 31017 0.69 0.980101
Target:  5'- gUCGAGCGCgGUCUUCaUCUACGAc--- -3'
miRNA:   3'- -GGCUUGCG-CAGGAGcAGAUGCUucag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.