miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 6163 0.66 0.997273
Target:  5'- aCCGGACGC-----UGUCUGCGAGGcUCg -3'
miRNA:   3'- -GGCUUGCGcaggaGCAGAUGCUUC-AG- -5'
15697 3' -51.8 NC_004065.1 + 10526 0.66 0.998354
Target:  5'- aCGAuCGCGaCCgUCGUauuCGAGGUCu -3'
miRNA:   3'- gGCUuGCGCaGG-AGCAgauGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 12589 0.66 0.997685
Target:  5'- gCGGACGaUGUCUUUGU---CGAAGUCa -3'
miRNA:   3'- gGCUUGC-GCAGGAGCAgauGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 26990 0.66 0.996802
Target:  5'- aCGAcgACGUGUCgcgaaUCGUCgcGCGAAGUa -3'
miRNA:   3'- gGCU--UGCGCAGg----AGCAGa-UGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 27296 0.69 0.977882
Target:  5'- gCCGAcgACGCGUCUaUCGUCguCGAAGa- -3'
miRNA:   3'- -GGCU--UGCGCAGG-AGCAGauGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 28829 0.69 0.980101
Target:  5'- aCGAGgGUGUCC-CGUCgacgcgcACGAAGUg -3'
miRNA:   3'- gGCUUgCGCAGGaGCAGa------UGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 30519 0.67 0.994199
Target:  5'- uCCGGGgGCGUUC-CGaaaACGAAGUCg -3'
miRNA:   3'- -GGCUUgCGCAGGaGCagaUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 30818 0.72 0.940444
Target:  5'- aCCGucgcgguGCGCGUCCUCGcgacccUCgACGAAGcCg -3'
miRNA:   3'- -GGCu------UGCGCAGGAGC------AGaUGCUUCaG- -5'
15697 3' -51.8 NC_004065.1 + 31017 0.69 0.980101
Target:  5'- gUCGAGCGCgGUCUUCaUCUACGAc--- -3'
miRNA:   3'- -GGCUUGCG-CAGGAGcAGAUGCUucag -5'
15697 3' -51.8 NC_004065.1 + 31250 0.67 0.994199
Target:  5'- gCGAcCGUGUCCgaUCGUCUcUGcGGUCg -3'
miRNA:   3'- gGCUuGCGCAGG--AGCAGAuGCuUCAG- -5'
15697 3' -51.8 NC_004065.1 + 32170 0.69 0.98215
Target:  5'- aCG-GCGCGUCCcagaacgagGUCUGCGAgcuGGUCa -3'
miRNA:   3'- gGCuUGCGCAGGag-------CAGAUGCU---UCAG- -5'
15697 3' -51.8 NC_004065.1 + 32273 0.66 0.997685
Target:  5'- uCCGAGugcccgcugucCGCGUCCUCgGUCUccucguCGGAGcCc -3'
miRNA:   3'- -GGCUU-----------GCGCAGGAG-CAGAu-----GCUUCaG- -5'
15697 3' -51.8 NC_004065.1 + 34438 0.7 0.963994
Target:  5'- cUCGAGCcCGUCCgaGUCUucCGAGGUCg -3'
miRNA:   3'- -GGCUUGcGCAGGagCAGAu-GCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 40819 0.66 0.998354
Target:  5'- -aGGACGCGUUCggccgCGUCccugACGuuGUCc -3'
miRNA:   3'- ggCUUGCGCAGGa----GCAGa---UGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 41061 1.12 0.009227
Target:  5'- gCCGAACGCGUCCUCGUCUACGAAGUCu -3'
miRNA:   3'- -GGCUUGCGCAGGAGCAGAUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 42382 0.66 0.997273
Target:  5'- uCCG-GCGUGUCCcCGUCgUGCGccaaaacGGUCa -3'
miRNA:   3'- -GGCuUGCGCAGGaGCAG-AUGCu------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 44797 0.66 0.998354
Target:  5'- uCCG-ACGUGUCCUCcgaUACGGAuUCu -3'
miRNA:   3'- -GGCuUGCGCAGGAGcagAUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 45053 0.66 0.997273
Target:  5'- aCGG--GCGUCCUCGUCgaaauCGAGuUCg -3'
miRNA:   3'- gGCUugCGCAGGAGCAGau---GCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 47724 0.73 0.902626
Target:  5'- cUCGAGCGUGgCCUUGaUC-ACGggGUCa -3'
miRNA:   3'- -GGCUUGCGCaGGAGC-AGaUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 50514 0.7 0.972905
Target:  5'- cCCGAAUcggGCGUCUUCGagugcucCUACGAcGUCu -3'
miRNA:   3'- -GGCUUG---CGCAGGAGCa------GAUGCUuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.