miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 50853 0.67 0.993334
Target:  5'- gCCGGGCGCGgggCCUCug--ACGGAGa- -3'
miRNA:   3'- -GGCUUGCGCa--GGAGcagaUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 60082 0.69 0.984035
Target:  5'- gCCGcGCuCGUCgUCGUCgaaGAGGUCg -3'
miRNA:   3'- -GGCuUGcGCAGgAGCAGaugCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 61587 0.66 0.996802
Target:  5'- cCCGGGucgcCGCGgcucucgCCgUCGagUGCGAGGUCg -3'
miRNA:   3'- -GGCUU----GCGCa------GG-AGCagAUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 61692 0.67 0.995658
Target:  5'- uCCGcAGCGCGUCa-CGUCcGCGgcGUa -3'
miRNA:   3'- -GGC-UUGCGCAGgaGCAGaUGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 62018 0.69 0.977882
Target:  5'- gCCGAuucUGCGcCCUCGUCaACGAgaAGUg -3'
miRNA:   3'- -GGCUu--GCGCaGGAGCAGaUGCU--UCAg -5'
15697 3' -51.8 NC_004065.1 + 63545 0.68 0.992369
Target:  5'- gCGAGCGUGUUCUUGguggCgGCGGAGa- -3'
miRNA:   3'- gGCUUGCGCAGGAGCa---GaUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 76295 0.68 0.991295
Target:  5'- cCUGAGCuCGUUCUCGUCgagcCGGAGg- -3'
miRNA:   3'- -GGCUUGcGCAGGAGCAGau--GCUUCag -5'
15697 3' -51.8 NC_004065.1 + 77304 0.66 0.996998
Target:  5'- cUCGGcCGUGUUCUCGUCgcCGAuccgcgccagcuccgAGUCg -3'
miRNA:   3'- -GGCUuGCGCAGGAGCAGauGCU---------------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 78024 0.66 0.998354
Target:  5'- gCUGAGCGCGcugaccuaCCUgGUCcUGCGucAGGUCg -3'
miRNA:   3'- -GGCUUGCGCa-------GGAgCAG-AUGC--UUCAG- -5'
15697 3' -51.8 NC_004065.1 + 78196 0.67 0.994199
Target:  5'- aCGAACGCGUaCC-CGUC-GCGc-GUCg -3'
miRNA:   3'- gGCUUGCGCA-GGaGCAGaUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 78533 0.7 0.972905
Target:  5'- gCUGAguuGCGUCUUCGUCU-UGAAGUUa -3'
miRNA:   3'- -GGCUug-CGCAGGAGCAGAuGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 81413 0.71 0.944927
Target:  5'- cCCGGGCcCGUcCCUCGUCcccgGCGGAGa- -3'
miRNA:   3'- -GGCUUGcGCA-GGAGCAGa---UGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 85175 0.68 0.988794
Target:  5'- aUGAACuGCGUCgUCGUCgucACGAaagcuaGGUCc -3'
miRNA:   3'- gGCUUG-CGCAGgAGCAGa--UGCU------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 85794 0.66 0.997685
Target:  5'- aCCGAgGCGCGagaaCCggCGUCgGCGAgAGUCu -3'
miRNA:   3'- -GGCU-UGCGCa---GGa-GCAGaUGCU-UCAG- -5'
15697 3' -51.8 NC_004065.1 + 89056 0.67 0.993692
Target:  5'- uUGGGCGCGUCCUUGaggagacaggggaaCUGCGAguGGUUc -3'
miRNA:   3'- gGCUUGCGCAGGAGCa-------------GAUGCU--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 91148 0.66 0.998546
Target:  5'- uCCGAgcucgcguucagcuACGCGUCUaucuaucuugauUcCGUCUACGAAuUCa -3'
miRNA:   3'- -GGCU--------------UGCGCAGG------------A-GCAGAUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 96299 0.69 0.977882
Target:  5'- aCGGACGcCGUCCacacggacucCGUCU-CGggGUCc -3'
miRNA:   3'- gGCUUGC-GCAGGa---------GCAGAuGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 96773 0.66 0.997685
Target:  5'- cUCGGACuCGUCgUCGUCcuccgACGAGGa- -3'
miRNA:   3'- -GGCUUGcGCAGgAGCAGa----UGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 102131 0.67 0.994199
Target:  5'- gCCGccccgGCGUCgUCGUCUGCGgcGg- -3'
miRNA:   3'- -GGCuug--CGCAGgAGCAGAUGCuuCag -5'
15697 3' -51.8 NC_004065.1 + 102542 0.74 0.876034
Target:  5'- cUCG-ACGCGUCCUCGUCcgaGAGGg- -3'
miRNA:   3'- -GGCuUGCGCAGGAGCAGaugCUUCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.