miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 141980 0.66 0.997976
Target:  5'- gUCGGGaGCGUCCUUGUCgcuaaccguuuCGAaauAGUCa -3'
miRNA:   3'- -GGCUUgCGCAGGAGCAGau---------GCU---UCAG- -5'
15697 3' -51.8 NC_004065.1 + 143521 0.72 0.940444
Target:  5'- gUGAGCaGCGUCCUCGacgUCUGgGAGGg- -3'
miRNA:   3'- gGCUUG-CGCAGGAGC---AGAUgCUUCag -5'
15697 3' -51.8 NC_004065.1 + 151685 0.71 0.953213
Target:  5'- aCCGccAGCGCGggcgCCcugcaUCGUCUGCGucgGGUCg -3'
miRNA:   3'- -GGC--UUGCGCa---GG-----AGCAGAUGCu--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 152817 0.66 0.996802
Target:  5'- -aGGACGauuucuacgaccUGUCCUaCGUCgauCGAGGUCg -3'
miRNA:   3'- ggCUUGC------------GCAGGA-GCAGau-GCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 153058 0.7 0.975486
Target:  5'- -aGAAauCGUCCUCGUCgucgGAGGUCa -3'
miRNA:   3'- ggCUUgcGCAGGAGCAGaug-CUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 159444 0.7 0.972905
Target:  5'- uCCGAucgACGuCGUCgUUGUUUGCGAGacGUCg -3'
miRNA:   3'- -GGCU---UGC-GCAGgAGCAGAUGCUU--CAG- -5'
15697 3' -51.8 NC_004065.1 + 159717 0.71 0.944927
Target:  5'- gCCGAACGCG-CCgaCGUCUcgcaaacaacgACGAcGUCg -3'
miRNA:   3'- -GGCUUGCGCaGGa-GCAGA-----------UGCUuCAG- -5'
15697 3' -51.8 NC_004065.1 + 175754 0.73 0.902626
Target:  5'- gCGGACGCGUUCU-GUCUACuGAcGGUCc -3'
miRNA:   3'- gGCUUGCGCAGGAgCAGAUG-CU-UCAG- -5'
15697 3' -51.8 NC_004065.1 + 176399 0.71 0.949182
Target:  5'- aCGGACGC-UCCUCGUC--CGAAGa- -3'
miRNA:   3'- gGCUUGCGcAGGAGCAGauGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 176871 0.66 0.997685
Target:  5'- gCCGGGCGCccgcuaucaUCCUCGUCUGCc----- -3'
miRNA:   3'- -GGCUUGCGc--------AGGAGCAGAUGcuucag -5'
15697 3' -51.8 NC_004065.1 + 186833 0.66 0.998354
Target:  5'- aCgGAGCGCcgccGUCCUCGguguagACGuuGUCg -3'
miRNA:   3'- -GgCUUGCG----CAGGAGCaga---UGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 190970 0.69 0.980101
Target:  5'- aUGAAUGCcUUCUcCGUgUGCGggGUCa -3'
miRNA:   3'- gGCUUGCGcAGGA-GCAgAUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 191249 0.68 0.991295
Target:  5'- gCCGAcuugAUGUGauccagCCUCGUCU-CGAAGUg -3'
miRNA:   3'- -GGCU----UGCGCa-----GGAGCAGAuGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 194856 0.68 0.992369
Target:  5'- aCCgGGACGaCGgCUUCGUCUuCGAGGUg -3'
miRNA:   3'- -GG-CUUGC-GCaGGAGCAGAuGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 195823 0.67 0.993334
Target:  5'- -gGGACGCGaaUCCUgCGgcgCgaugGCGGAGUCu -3'
miRNA:   3'- ggCUUGCGC--AGGA-GCa--Ga---UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 197198 0.69 0.98215
Target:  5'- -gGAGCGUggacccggGUCUUCGUCUACGAGa-- -3'
miRNA:   3'- ggCUUGCG--------CAGGAGCAGAUGCUUcag -5'
15697 3' -51.8 NC_004065.1 + 199052 0.68 0.992369
Target:  5'- gCGAACGCGcUCCU-GUgUUGCGAAGa- -3'
miRNA:   3'- gGCUUGCGC-AGGAgCA-GAUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 200633 0.67 0.996266
Target:  5'- aCCGAugGCGUCgcgCUCGag-GCGAGaUCg -3'
miRNA:   3'- -GGCUugCGCAG---GAGCagaUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 201003 0.67 0.994199
Target:  5'- aCCG-ACGCGUgagccgCCUCGU---CGAGGUCc -3'
miRNA:   3'- -GGCuUGCGCA------GGAGCAgauGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 202015 0.69 0.980101
Target:  5'- gCGAugGCGUCCUCcUCgGCGcuGUa -3'
miRNA:   3'- gGCUugCGCAGGAGcAGaUGCuuCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.