miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 229424 0.67 0.994971
Target:  5'- cCUGAGCGCGUaaCUgGUCUgccaccACGggGUg -3'
miRNA:   3'- -GGCUUGCGCAg-GAgCAGA------UGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 224884 0.71 0.957022
Target:  5'- uCCGGACGCGUacaCGUCcACGguGUCg -3'
miRNA:   3'- -GGCUUGCGCAggaGCAGaUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 223352 0.66 0.998173
Target:  5'- gCGGGCacggccucgGCGUCCgccgucggaagcugCGUCgACGGAGUCc -3'
miRNA:   3'- gGCUUG---------CGCAGGa-------------GCAGaUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 217198 0.68 0.991295
Target:  5'- -aGGACGuCGUCCcgggugucgCGUCcgaggACGAAGUCu -3'
miRNA:   3'- ggCUUGC-GCAGGa--------GCAGa----UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 216953 0.68 0.992369
Target:  5'- cCCgGGACGaCGUCCUCGuaagucagcggUCUACGGAu-- -3'
miRNA:   3'- -GG-CUUGC-GCAGGAGC-----------AGAUGCUUcag -5'
15697 3' -51.8 NC_004065.1 + 210711 0.66 0.998044
Target:  5'- cCCGAGCGUuucgacGcCUUUGUCUACGGuguaacguGUCa -3'
miRNA:   3'- -GGCUUGCG------CaGGAGCAGAUGCUu-------CAG- -5'
15697 3' -51.8 NC_004065.1 + 210403 0.67 0.994971
Target:  5'- aUGGACGUgugGUCCUUGaUCgcgauCGGAGUCg -3'
miRNA:   3'- gGCUUGCG---CAGGAGC-AGau---GCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 209939 0.7 0.975486
Target:  5'- gUGAGuCGCcgGUCCUCGUUcuUACGgcGUCg -3'
miRNA:   3'- gGCUU-GCG--CAGGAGCAG--AUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 208290 0.7 0.967165
Target:  5'- uCUGAGCGUG-CUgCGUCguaACGAGGUCu -3'
miRNA:   3'- -GGCUUGCGCaGGaGCAGa--UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 206784 0.68 0.98735
Target:  5'- uCCGAuuCGCGUCCgcgcuaucgcCGUCUgguGCGuGGUCu -3'
miRNA:   3'- -GGCUu-GCGCAGGa---------GCAGA---UGCuUCAG- -5'
15697 3' -51.8 NC_004065.1 + 202772 0.66 0.997273
Target:  5'- uUGAGCGCG-CCUCugaucuGUCUGgGuguGGUCa -3'
miRNA:   3'- gGCUUGCGCaGGAG------CAGAUgCu--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 202015 0.69 0.980101
Target:  5'- gCGAugGCGUCCUCcUCgGCGcuGUa -3'
miRNA:   3'- gGCUugCGCAGGAGcAGaUGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 201003 0.67 0.994199
Target:  5'- aCCG-ACGCGUgagccgCCUCGU---CGAGGUCc -3'
miRNA:   3'- -GGCuUGCGCA------GGAGCAgauGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 200633 0.67 0.996266
Target:  5'- aCCGAugGCGUCgcgCUCGag-GCGAGaUCg -3'
miRNA:   3'- -GGCUugCGCAG---GAGCagaUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 199052 0.68 0.992369
Target:  5'- gCGAACGCGcUCCU-GUgUUGCGAAGa- -3'
miRNA:   3'- gGCUUGCGC-AGGAgCA-GAUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 197198 0.69 0.98215
Target:  5'- -gGAGCGUggacccggGUCUUCGUCUACGAGa-- -3'
miRNA:   3'- ggCUUGCG--------CAGGAGCAGAUGCUUcag -5'
15697 3' -51.8 NC_004065.1 + 195823 0.67 0.993334
Target:  5'- -gGGACGCGaaUCCUgCGgcgCgaugGCGGAGUCu -3'
miRNA:   3'- ggCUUGCGC--AGGA-GCa--Ga---UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 194856 0.68 0.992369
Target:  5'- aCCgGGACGaCGgCUUCGUCUuCGAGGUg -3'
miRNA:   3'- -GG-CUUGC-GCaGGAGCAGAuGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 191249 0.68 0.991295
Target:  5'- gCCGAcuugAUGUGauccagCCUCGUCU-CGAAGUg -3'
miRNA:   3'- -GGCU----UGCGCa-----GGAGCAGAuGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 190970 0.69 0.980101
Target:  5'- aUGAAUGCcUUCUcCGUgUGCGggGUCa -3'
miRNA:   3'- gGCUUGCGcAGGA-GCAgAUGCuuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.