miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 186833 0.66 0.998354
Target:  5'- aCgGAGCGCcgccGUCCUCGguguagACGuuGUCg -3'
miRNA:   3'- -GgCUUGCG----CAGGAGCaga---UGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 176871 0.66 0.997685
Target:  5'- gCCGGGCGCccgcuaucaUCCUCGUCUGCc----- -3'
miRNA:   3'- -GGCUUGCGc--------AGGAGCAGAUGcuucag -5'
15697 3' -51.8 NC_004065.1 + 176399 0.71 0.949182
Target:  5'- aCGGACGC-UCCUCGUC--CGAAGa- -3'
miRNA:   3'- gGCUUGCGcAGGAGCAGauGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 175754 0.73 0.902626
Target:  5'- gCGGACGCGUUCU-GUCUACuGAcGGUCc -3'
miRNA:   3'- gGCUUGCGCAGGAgCAGAUG-CU-UCAG- -5'
15697 3' -51.8 NC_004065.1 + 159717 0.71 0.944927
Target:  5'- gCCGAACGCG-CCgaCGUCUcgcaaacaacgACGAcGUCg -3'
miRNA:   3'- -GGCUUGCGCaGGa-GCAGA-----------UGCUuCAG- -5'
15697 3' -51.8 NC_004065.1 + 159444 0.7 0.972905
Target:  5'- uCCGAucgACGuCGUCgUUGUUUGCGAGacGUCg -3'
miRNA:   3'- -GGCU---UGC-GCAGgAGCAGAUGCUU--CAG- -5'
15697 3' -51.8 NC_004065.1 + 153058 0.7 0.975486
Target:  5'- -aGAAauCGUCCUCGUCgucgGAGGUCa -3'
miRNA:   3'- ggCUUgcGCAGGAGCAGaug-CUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 152817 0.66 0.996802
Target:  5'- -aGGACGauuucuacgaccUGUCCUaCGUCgauCGAGGUCg -3'
miRNA:   3'- ggCUUGC------------GCAGGA-GCAGau-GCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 151685 0.71 0.953213
Target:  5'- aCCGccAGCGCGggcgCCcugcaUCGUCUGCGucgGGUCg -3'
miRNA:   3'- -GGC--UUGCGCa---GG-----AGCAGAUGCu--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 143521 0.72 0.940444
Target:  5'- gUGAGCaGCGUCCUCGacgUCUGgGAGGg- -3'
miRNA:   3'- gGCUUG-CGCAGGAGC---AGAUgCUUCag -5'
15697 3' -51.8 NC_004065.1 + 141980 0.66 0.997976
Target:  5'- gUCGGGaGCGUCCUUGUCgcuaaccguuuCGAaauAGUCa -3'
miRNA:   3'- -GGCUUgCGCAGGAGCAGau---------GCU---UCAG- -5'
15697 3' -51.8 NC_004065.1 + 141794 0.67 0.994971
Target:  5'- gCCGAagaGCGCGUCCUCG-----GAGGUg -3'
miRNA:   3'- -GGCU---UGCGCAGGAGCagaugCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 141466 0.67 0.994971
Target:  5'- aCCGcACGCGgaucugCCugUCGUCgGCGcGGUCa -3'
miRNA:   3'- -GGCuUGCGCa-----GG--AGCAGaUGCuUCAG- -5'
15697 3' -51.8 NC_004065.1 + 133435 0.78 0.69128
Target:  5'- uUCGGGCGCGUcggCCUCGuUCUGCGAuuguuccgccucGGUCa -3'
miRNA:   3'- -GGCUUGCGCA---GGAGC-AGAUGCU------------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 132679 0.7 0.975486
Target:  5'- gCUGAACGUGguaUCCUaCGUgUGCGAGGa- -3'
miRNA:   3'- -GGCUUGCGC---AGGA-GCAgAUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 132398 0.71 0.949182
Target:  5'- cCUGGGCGCGaUCCUgagCGUCUACGuGGa- -3'
miRNA:   3'- -GGCUUGCGC-AGGA---GCAGAUGCuUCag -5'
15697 3' -51.8 NC_004065.1 + 127747 0.73 0.908718
Target:  5'- aCGAcgcGCGCcuuGUCCUCGUCgguggcgcCGggGUCg -3'
miRNA:   3'- gGCU---UGCG---CAGGAGCAGau------GCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 126132 0.66 0.998622
Target:  5'- gCUGGAUGCgGUCggCGUgCUGCGAgaAGUCc -3'
miRNA:   3'- -GGCUUGCG-CAGgaGCA-GAUGCU--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 123555 0.76 0.777642
Target:  5'- gCGc-CGCGUCCUCGUCgUACG-GGUCg -3'
miRNA:   3'- gGCuuGCGCAGGAGCAG-AUGCuUCAG- -5'
15697 3' -51.8 NC_004065.1 + 122512 0.67 0.994971
Target:  5'- gCCGcGCGCaccUCCUCGU--GCGAgcGGUCg -3'
miRNA:   3'- -GGCuUGCGc--AGGAGCAgaUGCU--UCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.