miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 122371 0.74 0.876034
Target:  5'- uCCGAGCagcccGCGuUCCUgGUCUGCGAcguGUCc -3'
miRNA:   3'- -GGCUUG-----CGC-AGGAgCAGAUGCUu--CAG- -5'
15697 3' -51.8 NC_004065.1 + 121473 0.66 0.998354
Target:  5'- gUCGGucgGCGCGUCCgcgggCGUgaaggugGCGAAGUUc -3'
miRNA:   3'- -GGCU---UGCGCAGGa----GCAga-----UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 118433 0.69 0.980101
Target:  5'- gCGAACacggcgGCGUCCUCGUCUuccuCGGccgggcGGUUg -3'
miRNA:   3'- gGCUUG------CGCAGGAGCAGAu---GCU------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 118108 0.72 0.914582
Target:  5'- gCCcAugGCGUCuCUCGUCgccgcgcggACGAGGUUg -3'
miRNA:   3'- -GGcUugCGCAG-GAGCAGa--------UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 115321 0.69 0.985766
Target:  5'- aCCGAGgcCGCGUCCUCGcgcGCGccGUUg -3'
miRNA:   3'- -GGCUU--GCGCAGGAGCagaUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 112279 0.66 0.996802
Target:  5'- gUCGu-CGuCGUCCUCGUCggGCGAGaaacucuuguuGUCg -3'
miRNA:   3'- -GGCuuGC-GCAGGAGCAGa-UGCUU-----------CAG- -5'
15697 3' -51.8 NC_004065.1 + 110060 0.68 0.992369
Target:  5'- aCGAGgGCGUUCUCGUCgaacgugcccGCGgcGUa -3'
miRNA:   3'- gGCUUgCGCAGGAGCAGa---------UGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 108761 0.66 0.998622
Target:  5'- gCCGAGC-CGUCgCggUCGUCgACGAGGa- -3'
miRNA:   3'- -GGCUUGcGCAG-G--AGCAGaUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 108632 0.68 0.991295
Target:  5'- uUGAGCGCGUCgUCGUCcuCGAAc-- -3'
miRNA:   3'- gGCUUGCGCAGgAGCAGauGCUUcag -5'
15697 3' -51.8 NC_004065.1 + 107078 0.67 0.995658
Target:  5'- gUGAGCuGCaUCCUCGUCUGgaacgcCGgcGUCg -3'
miRNA:   3'- gGCUUG-CGcAGGAGCAGAU------GCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 104134 0.66 0.998236
Target:  5'- gCGAGCGgaUCCUCGUCgucgccuuccgcgGCGguGUCg -3'
miRNA:   3'- gGCUUGCgcAGGAGCAGa------------UGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 102542 0.74 0.876034
Target:  5'- cUCG-ACGCGUCCUCGUCcgaGAGGg- -3'
miRNA:   3'- -GGCuUGCGCAGGAGCAGaugCUUCag -5'
15697 3' -51.8 NC_004065.1 + 102131 0.67 0.994199
Target:  5'- gCCGccccgGCGUCgUCGUCUGCGgcGg- -3'
miRNA:   3'- -GGCuug--CGCAGgAGCAGAUGCuuCag -5'
15697 3' -51.8 NC_004065.1 + 96773 0.66 0.997685
Target:  5'- cUCGGACuCGUCgUCGUCcuccgACGAGGa- -3'
miRNA:   3'- -GGCUUGcGCAGgAGCAGa----UGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 96299 0.69 0.977882
Target:  5'- aCGGACGcCGUCCacacggacucCGUCU-CGggGUCc -3'
miRNA:   3'- gGCUUGC-GCAGGa---------GCAGAuGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 91148 0.66 0.998546
Target:  5'- uCCGAgcucgcguucagcuACGCGUCUaucuaucuugauUcCGUCUACGAAuUCa -3'
miRNA:   3'- -GGCU--------------UGCGCAGG------------A-GCAGAUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 89056 0.67 0.993692
Target:  5'- uUGGGCGCGUCCUUGaggagacaggggaaCUGCGAguGGUUc -3'
miRNA:   3'- gGCUUGCGCAGGAGCa-------------GAUGCU--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 85794 0.66 0.997685
Target:  5'- aCCGAgGCGCGagaaCCggCGUCgGCGAgAGUCu -3'
miRNA:   3'- -GGCU-UGCGCa---GGa-GCAGaUGCU-UCAG- -5'
15697 3' -51.8 NC_004065.1 + 85175 0.68 0.988794
Target:  5'- aUGAACuGCGUCgUCGUCgucACGAaagcuaGGUCc -3'
miRNA:   3'- gGCUUG-CGCAGgAGCAGa--UGCU------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 81413 0.71 0.944927
Target:  5'- cCCGGGCcCGUcCCUCGUCcccgGCGGAGa- -3'
miRNA:   3'- -GGCUUGcGCA-GGAGCAGa---UGCUUCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.