miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 78533 0.7 0.972905
Target:  5'- gCUGAguuGCGUCUUCGUCU-UGAAGUUa -3'
miRNA:   3'- -GGCUug-CGCAGGAGCAGAuGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 78196 0.67 0.994199
Target:  5'- aCGAACGCGUaCC-CGUC-GCGc-GUCg -3'
miRNA:   3'- gGCUUGCGCA-GGaGCAGaUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 78024 0.66 0.998354
Target:  5'- gCUGAGCGCGcugaccuaCCUgGUCcUGCGucAGGUCg -3'
miRNA:   3'- -GGCUUGCGCa-------GGAgCAG-AUGC--UUCAG- -5'
15697 3' -51.8 NC_004065.1 + 77304 0.66 0.996998
Target:  5'- cUCGGcCGUGUUCUCGUCgcCGAuccgcgccagcuccgAGUCg -3'
miRNA:   3'- -GGCUuGCGCAGGAGCAGauGCU---------------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 76295 0.68 0.991295
Target:  5'- cCUGAGCuCGUUCUCGUCgagcCGGAGg- -3'
miRNA:   3'- -GGCUUGcGCAGGAGCAGau--GCUUCag -5'
15697 3' -51.8 NC_004065.1 + 63545 0.68 0.992369
Target:  5'- gCGAGCGUGUUCUUGguggCgGCGGAGa- -3'
miRNA:   3'- gGCUUGCGCAGGAGCa---GaUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 62018 0.69 0.977882
Target:  5'- gCCGAuucUGCGcCCUCGUCaACGAgaAGUg -3'
miRNA:   3'- -GGCUu--GCGCaGGAGCAGaUGCU--UCAg -5'
15697 3' -51.8 NC_004065.1 + 61692 0.67 0.995658
Target:  5'- uCCGcAGCGCGUCa-CGUCcGCGgcGUa -3'
miRNA:   3'- -GGC-UUGCGCAGgaGCAGaUGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 61587 0.66 0.996802
Target:  5'- cCCGGGucgcCGCGgcucucgCCgUCGagUGCGAGGUCg -3'
miRNA:   3'- -GGCUU----GCGCa------GG-AGCagAUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 60082 0.69 0.984035
Target:  5'- gCCGcGCuCGUCgUCGUCgaaGAGGUCg -3'
miRNA:   3'- -GGCuUGcGCAGgAGCAGaugCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 50853 0.67 0.993334
Target:  5'- gCCGGGCGCGgggCCUCug--ACGGAGa- -3'
miRNA:   3'- -GGCUUGCGCa--GGAGcagaUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 50514 0.7 0.972905
Target:  5'- cCCGAAUcggGCGUCUUCGagugcucCUACGAcGUCu -3'
miRNA:   3'- -GGCUUG---CGCAGGAGCa------GAUGCUuCAG- -5'
15697 3' -51.8 NC_004065.1 + 47724 0.73 0.902626
Target:  5'- cUCGAGCGUGgCCUUGaUC-ACGggGUCa -3'
miRNA:   3'- -GGCUUGCGCaGGAGC-AGaUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 45053 0.66 0.997273
Target:  5'- aCGG--GCGUCCUCGUCgaaauCGAGuUCg -3'
miRNA:   3'- gGCUugCGCAGGAGCAGau---GCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 44797 0.66 0.998354
Target:  5'- uCCG-ACGUGUCCUCcgaUACGGAuUCu -3'
miRNA:   3'- -GGCuUGCGCAGGAGcagAUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 42382 0.66 0.997273
Target:  5'- uCCG-GCGUGUCCcCGUCgUGCGccaaaacGGUCa -3'
miRNA:   3'- -GGCuUGCGCAGGaGCAG-AUGCu------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 41061 1.12 0.009227
Target:  5'- gCCGAACGCGUCCUCGUCUACGAAGUCu -3'
miRNA:   3'- -GGCUUGCGCAGGAGCAGAUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 40819 0.66 0.998354
Target:  5'- -aGGACGCGUUCggccgCGUCccugACGuuGUCc -3'
miRNA:   3'- ggCUUGCGCAGGa----GCAGa---UGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 34438 0.7 0.963994
Target:  5'- cUCGAGCcCGUCCgaGUCUucCGAGGUCg -3'
miRNA:   3'- -GGCUUGcGCAGGagCAGAu-GCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 32273 0.66 0.997685
Target:  5'- uCCGAGugcccgcugucCGCGUCCUCgGUCUccucguCGGAGcCc -3'
miRNA:   3'- -GGCUU-----------GCGCAGGAG-CAGAu-----GCUUCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.