Results 81 - 91 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15697 | 3' | -51.8 | NC_004065.1 | + | 32170 | 0.69 | 0.98215 |
Target: 5'- aCG-GCGCGUCCcagaacgagGUCUGCGAgcuGGUCa -3' miRNA: 3'- gGCuUGCGCAGGag-------CAGAUGCU---UCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 31250 | 0.67 | 0.994199 |
Target: 5'- gCGAcCGUGUCCgaUCGUCUcUGcGGUCg -3' miRNA: 3'- gGCUuGCGCAGG--AGCAGAuGCuUCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 31017 | 0.69 | 0.980101 |
Target: 5'- gUCGAGCGCgGUCUUCaUCUACGAc--- -3' miRNA: 3'- -GGCUUGCG-CAGGAGcAGAUGCUucag -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 30818 | 0.72 | 0.940444 |
Target: 5'- aCCGucgcgguGCGCGUCCUCGcgacccUCgACGAAGcCg -3' miRNA: 3'- -GGCu------UGCGCAGGAGC------AGaUGCUUCaG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 30519 | 0.67 | 0.994199 |
Target: 5'- uCCGGGgGCGUUC-CGaaaACGAAGUCg -3' miRNA: 3'- -GGCUUgCGCAGGaGCagaUGCUUCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 28829 | 0.69 | 0.980101 |
Target: 5'- aCGAGgGUGUCC-CGUCgacgcgcACGAAGUg -3' miRNA: 3'- gGCUUgCGCAGGaGCAGa------UGCUUCAg -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 27296 | 0.69 | 0.977882 |
Target: 5'- gCCGAcgACGCGUCUaUCGUCguCGAAGa- -3' miRNA: 3'- -GGCU--UGCGCAGG-AGCAGauGCUUCag -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 26990 | 0.66 | 0.996802 |
Target: 5'- aCGAcgACGUGUCgcgaaUCGUCgcGCGAAGUa -3' miRNA: 3'- gGCU--UGCGCAGg----AGCAGa-UGCUUCAg -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 12589 | 0.66 | 0.997685 |
Target: 5'- gCGGACGaUGUCUUUGU---CGAAGUCa -3' miRNA: 3'- gGCUUGC-GCAGGAGCAgauGCUUCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 10526 | 0.66 | 0.998354 |
Target: 5'- aCGAuCGCGaCCgUCGUauuCGAGGUCu -3' miRNA: 3'- gGCUuGCGCaGG-AGCAgauGCUUCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 6163 | 0.66 | 0.997273 |
Target: 5'- aCCGGACGC-----UGUCUGCGAGGcUCg -3' miRNA: 3'- -GGCUUGCGcaggaGCAGAUGCUUC-AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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