miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 50853 0.67 0.993334
Target:  5'- gCCGGGCGCGgggCCUCug--ACGGAGa- -3'
miRNA:   3'- -GGCUUGCGCa--GGAGcagaUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 118433 0.69 0.980101
Target:  5'- gCGAACacggcgGCGUCCUCGUCUuccuCGGccgggcGGUUg -3'
miRNA:   3'- gGCUUG------CGCAGGAGCAGAu---GCU------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 202015 0.69 0.980101
Target:  5'- gCGAugGCGUCCUCcUCgGCGcuGUa -3'
miRNA:   3'- gGCUugCGCAGGAGcAGaUGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 190970 0.69 0.980101
Target:  5'- aUGAAUGCcUUCUcCGUgUGCGggGUCa -3'
miRNA:   3'- gGCUUGCGcAGGA-GCAgAUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 60082 0.69 0.984035
Target:  5'- gCCGcGCuCGUCgUCGUCgaaGAGGUCg -3'
miRNA:   3'- -GGCuUGcGCAGgAGCAGaugCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 76295 0.68 0.991295
Target:  5'- cCUGAGCuCGUUCUCGUCgagcCGGAGg- -3'
miRNA:   3'- -GGCUUGcGCAGGAGCAGau--GCUUCag -5'
15697 3' -51.8 NC_004065.1 + 191249 0.68 0.991295
Target:  5'- gCCGAcuugAUGUGauccagCCUCGUCU-CGAAGUg -3'
miRNA:   3'- -GGCU----UGCGCa-----GGAGCAGAuGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 63545 0.68 0.992369
Target:  5'- gCGAGCGUGUUCUUGguggCgGCGGAGa- -3'
miRNA:   3'- gGCUUGCGCAGGAGCa---GaUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 216953 0.68 0.992369
Target:  5'- cCCgGGACGaCGUCCUCGuaagucagcggUCUACGGAu-- -3'
miRNA:   3'- -GG-CUUGC-GCAGGAGC-----------AGAUGCUUcag -5'
15697 3' -51.8 NC_004065.1 + 96299 0.69 0.977882
Target:  5'- aCGGACGcCGUCCacacggacucCGUCU-CGggGUCc -3'
miRNA:   3'- gGCUUGC-GCAGGa---------GCAGAuGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 27296 0.69 0.977882
Target:  5'- gCCGAcgACGCGUCUaUCGUCguCGAAGa- -3'
miRNA:   3'- -GGCU--UGCGCAGG-AGCAGauGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 159444 0.7 0.972905
Target:  5'- uCCGAucgACGuCGUCgUUGUUUGCGAGacGUCg -3'
miRNA:   3'- -GGCU---UGC-GCAGgAGCAGAUGCUU--CAG- -5'
15697 3' -51.8 NC_004065.1 + 123555 0.76 0.777642
Target:  5'- gCGc-CGCGUCCUCGUCgUACG-GGUCg -3'
miRNA:   3'- gGCuuGCGCAGGAGCAG-AUGCuUCAG- -5'
15697 3' -51.8 NC_004065.1 + 47724 0.73 0.902626
Target:  5'- cUCGAGCGUGgCCUUGaUC-ACGggGUCa -3'
miRNA:   3'- -GGCUUGCGCaGGAGC-AGaUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 118108 0.72 0.914582
Target:  5'- gCCcAugGCGUCuCUCGUCgccgcgcggACGAGGUUg -3'
miRNA:   3'- -GGcUugCGCAG-GAGCAGa--------UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 30818 0.72 0.940444
Target:  5'- aCCGucgcgguGCGCGUCCUCGcgacccUCgACGAAGcCg -3'
miRNA:   3'- -GGCu------UGCGCAGGAGC------AGaUGCUUCaG- -5'
15697 3' -51.8 NC_004065.1 + 143521 0.72 0.940444
Target:  5'- gUGAGCaGCGUCCUCGacgUCUGgGAGGg- -3'
miRNA:   3'- gGCUUG-CGCAGGAGC---AGAUgCUUCag -5'
15697 3' -51.8 NC_004065.1 + 81413 0.71 0.944927
Target:  5'- cCCGGGCcCGUcCCUCGUCcccgGCGGAGa- -3'
miRNA:   3'- -GGCUUGcGCA-GGAGCAGa---UGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 151685 0.71 0.953213
Target:  5'- aCCGccAGCGCGggcgCCcugcaUCGUCUGCGucgGGUCg -3'
miRNA:   3'- -GGC--UUGCGCa---GG-----AGCAGAUGCu--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 224884 0.71 0.957022
Target:  5'- uCCGGACGCGUacaCGUCcACGguGUCg -3'
miRNA:   3'- -GGCUUGCGCAggaGCAGaUGCuuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.