Results 61 - 80 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15697 | 3' | -51.8 | NC_004065.1 | + | 115321 | 0.69 | 0.985766 |
Target: 5'- aCCGAGgcCGCGUCCUCGcgcGCGccGUUg -3' miRNA: 3'- -GGCUU--GCGCAGGAGCagaUGCuuCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 32170 | 0.69 | 0.98215 |
Target: 5'- aCG-GCGCGUCCcagaacgagGUCUGCGAgcuGGUCa -3' miRNA: 3'- gGCuUGCGCAGGag-------CAGAUGCU---UCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 197198 | 0.69 | 0.98215 |
Target: 5'- -gGAGCGUggacccggGUCUUCGUCUACGAGa-- -3' miRNA: 3'- ggCUUGCG--------CAGGAGCAGAUGCUUcag -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 102542 | 0.74 | 0.876034 |
Target: 5'- cUCG-ACGCGUCCUCGUCcgaGAGGg- -3' miRNA: 3'- -GGCuUGCGCAGGAGCAGaugCUUCag -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 122371 | 0.74 | 0.876034 |
Target: 5'- uCCGAGCagcccGCGuUCCUgGUCUGCGAcguGUCc -3' miRNA: 3'- -GGCUUG-----CGC-AGGAgCAGAUGCUu--CAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 175754 | 0.73 | 0.902626 |
Target: 5'- gCGGACGCGUUCU-GUCUACuGAcGGUCc -3' miRNA: 3'- gGCUUGCGCAGGAgCAGAUG-CU-UCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 127747 | 0.73 | 0.908718 |
Target: 5'- aCGAcgcGCGCcuuGUCCUCGUCgguggcgcCGggGUCg -3' miRNA: 3'- gGCU---UGCG---CAGGAGCAGau------GCuuCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 159717 | 0.71 | 0.944927 |
Target: 5'- gCCGAACGCG-CCgaCGUCUcgcaaacaacgACGAcGUCg -3' miRNA: 3'- -GGCUUGCGCaGGa-GCAGA-----------UGCUuCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 176399 | 0.71 | 0.949182 |
Target: 5'- aCGGACGC-UCCUCGUC--CGAAGa- -3' miRNA: 3'- gGCUUGCGcAGGAGCAGauGCUUCag -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 132398 | 0.71 | 0.949182 |
Target: 5'- cCUGGGCGCGaUCCUgagCGUCUACGuGGa- -3' miRNA: 3'- -GGCUUGCGC-AGGA---GCAGAUGCuUCag -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 34438 | 0.7 | 0.963994 |
Target: 5'- cUCGAGCcCGUCCgaGUCUucCGAGGUCg -3' miRNA: 3'- -GGCUUGcGCAGGagCAGAu-GCUUCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 208290 | 0.7 | 0.967165 |
Target: 5'- uCUGAGCGUG-CUgCGUCguaACGAGGUCu -3' miRNA: 3'- -GGCUUGCGCaGGaGCAGa--UGCUUCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 78533 | 0.7 | 0.972905 |
Target: 5'- gCUGAguuGCGUCUUCGUCU-UGAAGUUa -3' miRNA: 3'- -GGCUug-CGCAGGAGCAGAuGCUUCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 50514 | 0.7 | 0.972905 |
Target: 5'- cCCGAAUcggGCGUCUUCGagugcucCUACGAcGUCu -3' miRNA: 3'- -GGCUUG---CGCAGGAGCa------GAUGCUuCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 209939 | 0.7 | 0.975486 |
Target: 5'- gUGAGuCGCcgGUCCUCGUUcuUACGgcGUCg -3' miRNA: 3'- gGCUU-GCG--CAGGAGCAG--AUGCuuCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 153058 | 0.7 | 0.975486 |
Target: 5'- -aGAAauCGUCCUCGUCgucgGAGGUCa -3' miRNA: 3'- ggCUUgcGCAGGAGCAGaug-CUUCAG- -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 132679 | 0.7 | 0.975486 |
Target: 5'- gCUGAACGUGguaUCCUaCGUgUGCGAGGa- -3' miRNA: 3'- -GGCUUGCGC---AGGA-GCAgAUGCUUCag -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 62018 | 0.69 | 0.977882 |
Target: 5'- gCCGAuucUGCGcCCUCGUCaACGAgaAGUg -3' miRNA: 3'- -GGCUu--GCGCaGGAGCAGaUGCU--UCAg -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 31017 | 0.69 | 0.980101 |
Target: 5'- gUCGAGCGCgGUCUUCaUCUACGAc--- -3' miRNA: 3'- -GGCUUGCG-CAGGAGcAGAUGCUucag -5' |
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15697 | 3' | -51.8 | NC_004065.1 | + | 28829 | 0.69 | 0.980101 |
Target: 5'- aCGAGgGUGUCC-CGUCgacgcgcACGAAGUg -3' miRNA: 3'- gGCUUgCGCAGGaGCAGa------UGCUUCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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